Mc pipeline/sync brca exchange pipeline#1593

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melissacline wants to merge 17 commits intomasterfrom

mc_pipeline/sync_brca_exchange_pipeline

Commits on Oct 18, 2025

Initial update for basic compatibility with python 3.12. Tried to upgrade to python 3.13, but there's no support yet for pysam
melissacline
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Updated for basic compatibility with python 3.12
melissacline
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Commits on Dec 29, 2025

Updated Dockerfile to use Python 3.12

melissacline
and
claude
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Commits on Dec 30, 2025

Commits on Dec 31, 2025

Commits on Jan 5, 2026

Update pipeline configuration template for latest dependencies

melissacline
and
claude
committed

Commits on Jan 6, 2026

Merge branch 'master' into mc_pipeline/sync_brca_exchange_pipeline
melissacline
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