EnrichmentMap v2.1.0
Bug fixes and Added features in 2.1.0:
Bug fixes:
- Numerous bug fixes that are outlined here: https://github.com/BaderLab/EnrichmentMapApp/issues?q=is%3Aissue+is%3Aclosed+milestone%3A2.1_release
Features:
- Revamped post analysis interface and functionality.
- Post analysis can be run in known signature mode or signature discovery mode. Known signature mode calculates post analysis edges for a small subset of sets. Signature discovery mode allows for filtering of large set of potential signatures to help uncover most likely set.
- Post analysis edges can be calculated using a two sided or one sided Mann whitney test using rank files from either dataset1 or dataset2 separately. For example, this allows the user to look for pathways that contain a significant set of up-regulated miR targets only.
- Update g:profiler support so we no longer require a gmt file to be specified.
- Add the ability to specify the set of genes associated with the geneset in the generic enrichment file.
- Added “publication ready” button to legend panel so users can easily toggle between figure ready and normal view of network.