Implementation off ggm (but not mixed) #71
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* print mutex for printing for error handling * Init exp be gone for bgm() regular variable. * Add numerical analysis scripts to GH * Init bc model update. * Does not use ExpBeGone trick. * Metropolis works but NUTS not yet. * Fix mrfSampler documentation * Update dev/numerical_analysis files * Fix buildignore. Clean up BC-normalization code. Clean up dev/num_analysis for bc variables * Fix the denominator computations in the pseudolikelihood for Blume-Capel variables * Remove debugging tools for HMC components * Clean up c++ code for Blume-Capel * Update divergent transition warning * Update to prob computation of Blume-Capel variables in bgm() * Exp Be Gone for bgmCompare Bug fix to bgmCompare for BC variables * Cleanup * Update news.md
* Reorganize C++ sources into subdirectories - Move bgm- and bgmCompare-specific C++ code into src/bgm/ and src/bgmCompare/ - Update build system to support C++ sources in subdirectories - Generate src/sources.mk at configure time to list all .cpp files - Include sources.mk from Makevars.in using portable (CRAN-compliant) rules * Finalize C++ refactor: path-qualified headers and single include root - Reorganize remaining C++ files into src/ subdirectories - Include headers relative to src/ and drop per-module -I flags * Use ARMA_MY_LOG instead of arma::log in compute_Vn_mfm_sbm() * Cleanup Makevars.in * Final commit
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