Skip to content

Visualization fixes #284

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
plakrisenko merged 11 commits into from
Nov 11, 2025
Merged

Visualization fixes #284

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
6eb1e30
merge two plots
plakrisenko Oct 29, 2025
1523fd7
elowitz, update axes labels
plakrisenko Oct 29, 2025
b04bdc8
change scale, Laske model
plakrisenko Oct 29, 2025
3445a1e
fix zheng reference
plakrisenko Oct 29, 2025
e48e96e
brannmark, add datasetId and fix visualization spec
plakrisenko Oct 29, 2025
edb9894
fix Borghans axes labels
plakrisenko Nov 6, 2025
fcce00c
fix Bruno axes labels
plakrisenko Nov 6, 2025
86097cb
fix Crauste axes labels
plakrisenko Nov 6, 2025
d5e9396
Salazar, add visualization spec to the yaml file
plakrisenko Nov 6, 2025
ce1fc41
fix Weber axes labels
plakrisenko Nov 6, 2025
2fca448
fix Perelson axes labels
plakrisenko Nov 6, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions Benchmark-Models/Bertozzi_PNAS2020/visualizations.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
plotId plotName plotTypeSimulation datasetId xValues xOffset xLabel yValues yOffset yLabel legendEntry xScale yScale
conf_CA Confirmed case data from California LinePlot data_CA time 0 Time [d] after 2020-03-20 y_I_CA 0 Confirmed cases Confirmed cases lin log10
conf_NY Confirmed case data from New York LinePlot data_NY time 0 Time [d] after 2020-03-20 y_I_NY 0 Confirmed cases Confirmed cases lin log10
plot1 Confirmed case data LinePlot data_CA time 0 Time [d] after 2020-03-20 y_I_CA 0 Confirmed cases California lin log10
plot1 Confirmed case data LinePlot data_NY time 0 Time [d] after 2020-03-20 y_I_NY 0 Confirmed cases New York lin log10
2 changes: 1 addition & 1 deletion ...k-Models/Borghans_BiophysChem1997/visualizationSpecification_Borghans_BiophysChem1997.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
plot1 MeanAndSD LinePlot time lin values lin model1_data1 - Ca Ca time 0 0.0
plot1 MeanAndSD LinePlot time [min] lin Ca$^{2+}$ in cytosol [$\mu$M] lin model1_data1 - Ca Ca time 0 0
88 changes: 44 additions & 44 deletions Benchmark-Models/Brannmark_JBC2010/measurementData_Brannmark_JBC2010.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,44 +1,44 @@
observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters experimentId independentVariableId
IRS1_P_DosR Dose_0 Dose_0 18.385 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_001 29.115 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_01 26.365 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_1 28.292 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_3 42.308 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_10 105.029 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_100 94.971 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IR1_P Dose_0 Dose_100 0 0 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 100 0.9 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 82.667 1.15 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 77.333 1.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 60 2.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 50.667 3.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 56.667 5.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 45.667 7 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 52.333 10 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 41.333 15 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 42.667 20 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 35.333 30 k_IRP_1Step sigmaY1TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 0 0 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 227.667 0.9 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 205 1.15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 169.667 1.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 145.5 2.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 121.667 3.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 110.333 5.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 95 7 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 110 10 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 86.667 15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 73 20 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 100 30 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 TwoSteps 14.417 0 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 26.724 0.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 42.035 0.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 58.258 0.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 58.752 1.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 52.465 1.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 56.405 4 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 67.901 4.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 66.297 4.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 69.522 4.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 74.644 5.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 70.367 5.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time
observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters experimentId independentVariableId datasetId
IRS1_P_DosR Dose_0 Dose_0 18.385 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_001 29.115 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_01 26.365 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_1 28.292 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_3 42.308 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_10 105.029 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_100 94.971 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IR1_P Dose_0 Dose_100 0 0 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 100 0.9 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 82.667 1.15 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 77.333 1.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 60 2.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 50.667 3.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 56.667 5.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 45.667 7 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 52.333 10 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 41.333 15 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 42.667 20 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 35.333 30 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 0 0 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 227.667 0.9 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 205 1.15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 169.667 1.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 145.5 2.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 121.667 3.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 110.333 5.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 95 7 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 110 10 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 86.667 15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 73 20 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 100 30 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 TwoSteps 14.417 0 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 26.724 0.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 42.035 0.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 58.258 0.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 58.752 1.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 52.465 1.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 56.405 4 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 67.901 4.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 66.297 4.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 69.522 4.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 74.644 5.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 70.367 5.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
88 changes: 44 additions & 44 deletions Benchmark-Models/Brannmark_JBC2010/simulatedData_Brannmark_JBC2010.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,44 +1,44 @@
observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters experimentId independentVariableId
IRS1_P_DosR Dose_0 Dose_0 5.04030994035096 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_001 11.3541437232139 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_01 30.7569560314701 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_1 48.0671566365257 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_3 68.8054777834928 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_10 83.567481341805 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IRS1_P_DosR Dose_0 Dose_100 85.0149890438906 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
IR1_P Dose_0 Dose_100 2.22763226881289 0 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 99.3331254449145 0.9 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 83.1108237692557 1.15 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 76.9137049972788 1.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 59.6539158908547 2.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 55.0961009395699 3.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 52.0284374778894 5.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 50.2150261365795 7 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 47.2797089543243 10 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 43.4189654446421 15 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 40.6603409656943 20 k_IRP_1Step sigmaY1TimR one_step_time_response time
IR1_P Dose_0 Dose_100 37.3490089527785 30 k_IRP_1Step sigmaY1TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 5.99870254944543 0 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 220.689083467924 0.9 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 198.298517693265 1.15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 186.555740507902 1.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 137.837672156427 2.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 119.482691052972 3.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 109.357485387644 5.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 106.058083099213 7 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 101.180212633368 10 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 94.476981200747 15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 89.5032574659874 20 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 Dose_100 83.3227983363282 30 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
IRS1_P Dose_0 TwoSteps 3.58855311350541 0 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 23.5338571138169 0.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 43.6504194612097 0.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 55.3099963766159 0.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 59.4210435260655 1.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 60.1662824814612 1.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 53.9990033886593 4 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 58.8159608997996 4.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 64.9114355656794 4.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 70.7034173503167 4.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 74.223872149066 5.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time
IRS1_P Dose_0 TwoSteps 75.7194078733588 5.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time
observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters experimentId independentVariableId datasetId
IRS1_P_DosR Dose_0 Dose_0 5.04030994035096 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_001 11.3541437232139 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_01 30.7569560314701 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_1 48.0671566365257 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_3 68.8054777834928 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_10 83.567481341805 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IRS1_P_DosR Dose_0 Dose_100 85.0149890438906 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1 DosR
IR1_P Dose_0 Dose_100 2.22763226881289 0 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 99.3331254449145 0.9 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 83.1108237692557 1.15 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 76.9137049972788 1.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 59.6539158908547 2.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 55.0961009395699 3.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 52.0284374778894 5.3 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 50.2150261365795 7 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 47.2797089543243 10 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 43.4189654446421 15 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 40.6603409656943 20 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IR1_P Dose_0 Dose_100 37.3490089527785 30 k_IRP_1Step sigmaY1TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 5.99870254944543 0 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 220.689083467924 0.9 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 198.298517693265 1.15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 186.555740507902 1.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 137.837672156427 2.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 119.482691052972 3.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 109.357485387644 5.3 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 106.058083099213 7 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 101.180212633368 10 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 94.476981200747 15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 89.5032574659874 20 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 Dose_100 83.3227983363282 30 k_IRSiP_1Step sigmaY2TimR one_step_time_response time Dose_100
IRS1_P Dose_0 TwoSteps 3.58855311350541 0 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 23.5338571138169 0.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 43.6504194612097 0.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 55.3099963766159 0.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 59.4210435260655 1.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 60.1662824814612 1.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 53.9990033886593 4 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 58.8159608997996 4.34 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 64.9114355656794 4.6 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 70.7034173503167 4.9 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 74.223872149066 5.2 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
IRS1_P Dose_0 TwoSteps 75.7194078733588 5.5 k_IRSiP_2Step sigmaY2Step two_step_time_response time TwoSteps
10 changes: 5 additions & 5 deletions Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale yValues xValues xOffset yOffset
plot1 MeanAndSD ScatterPlot simulation lin measurements lin IRS1_P_DosR time 0 0
plot4 MeanAndSD LinePlot time lin values lin IRS1_P_DosR time 1 1
plot2 MeanAndSD LinePlot time lin values lin IR1_P time 0 0
plot3 MeanAndSD LinePlot time lin values lin IRS1_P time 0 0
plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale yValues xValues xOffset yOffset datasetId
plot1 MeanAndSD LinePlot time [min] lin IR phosphorylation lin IR1_P time 0 0 Dose_100
plot2 MeanAndSD LinePlot time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 Dose_100
plot3 MeanAndSD LinePlot Insulin [nM] log10 IRS1 phosphorylation lin IRS1_P_DosR insulin_dose_1 0 0 DosR
plot4 MeanAndSD LinePlot time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 TwoSteps
Loading