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plakrisenko merged 5 commits into from
Nov 21, 2025
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add visualization spec for Raimundez model #288

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0d0ab78
add visualization spec for Raimundez model
plakrisenko Nov 11, 2025
705d60c
fix titles and legends
plakrisenko Nov 11, 2025
ee3568a
visualization specifications for figures in the publication
plakrisenko Nov 11, 2025
303d574
visualization table for S3 figure
plakrisenko Nov 11, 2025
7884ad4
fix
plakrisenko Nov 11, 2025
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2 changes: 2 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/Raimundez_PCB2020.yaml
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Expand Up @@ -9,3 +9,5 @@ problems:
- observables_Raimundez_PCB2020.tsv
sbml_files:
- model_Raimundez_PCB2020.xml
visualization_files:
- visualizationSpecification_Raimundez_PCB2020.tsv
1,256 changes: 628 additions & 628 deletions Benchmark-Models/Raimundez_PCB2020/measurementData_Raimundez_PCB2020.tsv
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1,256 changes: 628 additions & 628 deletions Benchmark-Models/Raimundez_PCB2020/simulatedData_Raimundez_PCB2020.tsv
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180 changes: 180 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020.tsv
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25 changes: 25 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure2C.tsv
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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
plot61 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__0EGF
plot61 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__5EGF
plot64 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__0EGF
plot64 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__5EGF
plot70 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__0EGF
plot70 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__5EGF
plot76 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__0EGF
plot76 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__5EGF
plot62 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__0EGF
plot62 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__5EGF
plot65 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__0EGF
plot65 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__5EGF
plot71 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__0EGF
plot71 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__5EGF
plot77 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__0EGF
plot77 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__5EGF
plot60 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__0EGF
plot60 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__5EGF
plot63 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__0EGF
plot63 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__5EGF
plot69 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__0EGF
plot69 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__5EGF
plot75 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__0EGF
plot75 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__5EGF
9 changes: 9 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure2D.tsv
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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
plot78 Starvation medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_1min CET_level 0 0 ID6_MKN1_HM_1min__0EGF
plot78 Starvation medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_1min CET_level 0 0 ID6_MKN1_HM_1min__30EGF
plot79 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_3min CET_level 0 0 ID6_MKN1_HM_3min__0EGF
plot79 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_3min CET_level 0 0 ID6_MKN1_HM_3min__30EGF
plot3 Starvation medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_15min CET_level 0 0 ID6_MKN1_HM_15min__0EGF
plot3 Starvation medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_15min CET_level 0 0 ID6_MKN1_HM_15min__30EGF
plot4 Starvation medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_240min CET_level 0 0 ID6_MKN1_HM_240min__0EGF
plot4 Starvation medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_240min CET_level 0 0 ID6_MKN1_HM_240min__30EGF
25 changes: 25 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure3C.tsv
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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
plot6 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__0EGF
plot6 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__5EGF
plot9 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__0EGF
plot9 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__5EGF
plot12 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__0EGF
plot12 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__5EGF
plot15 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__0EGF
plot15 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__5EGF
plot7 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__0EGF
plot7 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__5EGF
plot10 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__0EGF
plot10 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__5EGF
plot13 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__0EGF
plot13 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__5EGF
plot16 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__0EGF
plot16 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__5EGF
plot5 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__0EGF
plot5 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__5EGF
plot8 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__0EGF
plot8 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__5EGF
plot11 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__0EGF
plot11 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__5EGF
plot14 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__0EGF
plot14 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__5EGF
25 changes: 25 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure3D.tsv
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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
plot20 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__0EGF
plot20 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__30EGF
plot23 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__0EGF
plot23 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__30EGF
plot26 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__0EGF
plot26 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__30EGF
plot29 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__0EGF
plot29 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__30EGF
plot21 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__0EGF
plot21 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__30EGF
plot24 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__0EGF
plot24 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__30EGF
plot27 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__0EGF
plot27 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__30EGF
plot30 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__0EGF
plot30 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__30EGF
plot19 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__0EGF
plot19 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__30EGF
plot22 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__0EGF
plot22 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__30EGF
plot25 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__0EGF
plot25 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__30EGF
plot28 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__0EGF
plot28 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__30EGF
16 changes: 16 additions & 0 deletions Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_FigureS3.tsv
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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
plot73 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pEGFR lin pEGFR pEGFR_ID2_MKN1_HM time 0 0 ID2_MKN1_HM
plot74 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pMAPK lin pMAPK pMAPK_ID2_MKN1_HM time 0 0 ID2_MKN1_HM
plot72 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pAKT lin pAKT pAKT_ID2_MKN1_HM time 0 0 ID2_MKN1_HM
plot40 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pEGFR lin pEGFR pEGFR_ID9b_MKN1_HM_1EGF time 0 0 MKN1_HM_1EGF
plot40 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pEGFR lin pEGFR pEGFR_ID9b_MKN1_HM_5EGF time 0 0 ID9b_MKN1_HM_5EGF
plot41 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pMAPK lin pMAPK pMAPK_ID9b_MKN1_HM_1EGF time 0 0 MKN1_HM_1EGF
plot41 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pMAPK lin pMAPK pMAPK_ID9b_MKN1_HM_5EGF time 0 0 ID9b_MKN1_HM_5EGF
plot17 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 0 ng/ml EGF EGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__0EGF
plot17 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 5 ng/ml EGF EGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__5EGF
plot18 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__0EGF
plot18 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__5EGF
plot58 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 0 ng/ml EGF EGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__0EGF
plot58 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 30 ng/ml EGF EGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__30EGF
plot59 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__0EGF
plot59 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__30EGF
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