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add Blasi visualization spec #291

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Merged
stephanmg merged 1 commit into from
Nov 21, 2025
Merged

add Blasi visualization spec #291

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3 changes: 3 additions & 0 deletions Benchmark-Models/Blasi_CellSystems2016/Blasi_CellSystems2016.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,3 +9,6 @@ problems:
- observables_Blasi_CellSystems2016.tsv
sbml_files:
- model_Blasi_CellSystems2016.xml
visualization_files:
- visualizationSpecification_Blasi_CellSystems2016.tsv

16 changes: 16 additions & 0 deletions Benchmark-Models/Blasi_CellSystems2016/visualizationSpecification_Blasi_CellSystems2016.tsv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 0ac observable_0ac time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5 observable_k5 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8 observable_k8 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K12 observable_k12 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K16 observable_k16 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K8 observable_k5k8 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K12 observable_k5k12 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8K12 observable_k8k12 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8K16 observable_k8k16 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K12K16 observable_k12k16 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K8K12 observable_k5k8k12 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K8K16 observable_k5k8k16 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K12K16 observable_k5k12k16 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8K12K16 observable_k8k12k16 time 0 0
plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 4ac observable_4ac time 0 0