Skip to content

Vis fixes3 #292

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
stephanmg wants to merge 7 commits into from
Closed

Vis fixes3 #292

Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
542ca38
Fix visualization specification for Zhao.
stephanmg Jun 27, 2024
8f39b74
Fix.
stephanmg Jun 27, 2024
ce27c30
Merge branch 'Benchmarking-Initiative:master' into master
stephanmg Jul 8, 2025
364e200
Merge remote-tracking branch 'upstream/master'
stephanmg Nov 19, 2025
10ee29c
Backward compatible changes to avoid nan in plot title (Brannmark).
stephanmg Nov 21, 2025
526ba76
Merge branch 'master' into vis_fixes3
stephanmg Nov 21, 2025
fd79168
Fix.
stephanmg Nov 21, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 4 additions & 4 deletions Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale yValues xValues xOffset yOffset datasetId
plot1 MeanAndSD LinePlot Time [min] lin IR phosphorylation lin IR1_P time 0 0 Dose_100
plot2 MeanAndSD LinePlot Time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 Dose_100
plot3 MeanAndSD LinePlot Insulin [nM] log10 IRS1 phosphorylation lin IRS1_P_DosR insulin_dose_1 0 0 DosR
plot4 MeanAndSD LinePlot Time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 TwoSteps
plot1 MeanAndSD LinePlot Time [min] lin IR phosphorylation lin IR1_P time 0 0 Dose_100
plot2 MeanAndSD LinePlot Time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 Dose_100
plot3 MeanAndSD LinePlot Insulin [nM] log10 IRS1 phosphorylation lin IRS1_P_DosR insulin_dose_1 0 0 DosR
plot4 MeanAndSD LinePlot Time [min] lin IRS1 phosphorylation lin IRS1_P time 0 0 TwoSteps