BiAPoL · zoccoler · Apr 11, 2025 · May 10, 2024 · May 15, 2024 · May 15, 2024
diff --git a/.github/workflows/book.yml b/.github/workflows/book.yml
@@ -6,9 +6,6 @@ on:
     branches:
     - master
     - main
-  pull_request:
-    branches:
-      - main
 
 # This job installs dependencies, build the book, and pushes it to `gh-pages`
 jobs:

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
@@ -23,10 +23,12 @@ jobs:
     strategy:
       matrix:
         platform: [ubuntu-latest, windows-latest, macos-13, macos-14]
-        python-version: ['3.9', '3.10']
+        python-version: ['3.9', '3.10', '3.11', '3.12']
         exclude:
           - python-version: "3.9"
             platform: macos-14
+          - python-version: "3.9"
+            platform: macos-13
 
     steps:
       - uses: actions/checkout@v3

diff --git a/docs/artists_api.md b/docs/artists_api.md
@@ -12,13 +12,13 @@
       ~Artist.data
       ~Artist.visible
       ~Artist.color_indices
+      ~Artist.overlay_colormap
 
    .. rubric:: Attributes Summary
 
    .. autosummary::
 
       ~Artist.ax
-      ~Artist.categorical_colormap
 
    .. rubric:: Methods Summary
 
@@ -31,11 +31,11 @@
    .. autoattribute:: data
    .. autoattribute:: visible
    .. autoattribute:: color_indices
+   .. autoattribute:: overlay_colormap
 
    .. rubric:: Attributes Documentation
 
    .. autoattribute:: ax
-   .. autoattribute:: categorical_colormap
 
    .. rubric:: Methods Documentation
 
@@ -51,14 +51,17 @@
       ~Scatter.data
       ~Scatter.visible
       ~Scatter.color_indices
+      ~Scatter.alpha
       ~Scatter.size
+      ~Scatter.overlay_colormap
+      ~Scatter.overlay_visible
+      ~Scatter.color_normalization_method
 
    .. rubric:: Attributes Summary
 
    .. autosummary::
 
       ~Artist.ax
-      ~Artist.categorical_colormap
 
    .. rubric:: Methods Summary
 
@@ -79,11 +82,14 @@
    .. autoattribute:: visible
    .. autoattribute:: color_indices
    .. autoattribute:: size
+   .. autoattribute:: alpha
+   .. autoattribute:: overlay_colormap
+   .. autoattribute:: overlay_visible
+   .. autoattribute:: color_normalization_method
 
    .. rubric:: Attributes Documentation
 
    .. autoattribute:: ax
-   .. autoattribute:: categorical_colormap
 
    .. rubric:: Methods Documentation
 
@@ -105,21 +111,28 @@
       ~Histogram2D.visible
       ~Histogram2D.color_indices
       ~Histogram2D.bins
-      ~Histogram2D.histogram_colormap
       ~Histogram2D.histogram
+      ~Histogram2D.histogram_colormap
+      ~Histogram2D.histogram_interpolation
+      ~Histogram2D.histogram_color_normalization_method
+      ~Histogram2D.overlay_colormap
+      ~Histogram2D.overlay_interpolation
+      ~Histogram2D.overlay_color_normalization_method
+      ~Histogram2D.overlay_opacity
+      ~Histogram2D.overlay_visible
+
 
    .. rubric:: Attributes Summary
 
    .. autosummary::
 
       ~Artist.ax
-      ~Artist.categorical_colormap
 
    .. rubric:: Methods Summary
 
    .. autosummary::
 
-      ~Histogram2D.indices_in_above_threshold_patches
+      ~Histogram2D.indices_in_patches_above_threshold
       ~Histogram2D.draw
 
    .. rubric:: Signals Summary
@@ -135,17 +148,24 @@
    .. autoattribute:: visible
    .. autoattribute:: color_indices
    .. autoattribute:: bins
-   .. autoattribute:: histogram_colormap
    .. autoattribute:: histogram
+   .. autoattribute:: histogram_colormap
+   .. autoattribute:: histogram_interpolation
+   .. autoattribute:: histogram_color_normalization_method
+   .. autoattribute:: overlay_colormap
+   .. autoattribute:: overlay_interpolation
+   .. autoattribute:: overlay_color_normalization_method
+   .. autoattribute:: overlay_opacity
+   .. autoattribute:: overlay_visible
+
 
    .. rubric:: Attributes Documentation
 
    .. autoattribute:: ax
-   .. autoattribute:: categorical_colormap
 
    .. rubric:: Methods Documentation
 
-   .. automethod:: indices_in_above_threshold_patches
+   .. automethod:: indices_in_patches_above_threshold
    .. automethod:: draw
 
    .. rubric:: Signals Documentation

diff --git a/docs/examples/canvas_widget_example.ipynb b/docs/examples/canvas_widget_example.ipynb
diff --git a/docs/examples/histogram_artist_example.ipynb b/docs/examples/histogram_artist_example.ipynb
diff --git a/docs/examples/scatter_artist_example.ipynb b/docs/examples/scatter_artist_example.ipynb
diff --git a/docs/images/ellipse_selector.gif b/docs/images/ellipse_selector.gif
diff --git a/docs/images/lasso_selector.gif b/docs/images/lasso_selector.gif
diff --git a/docs/images/rectangle_selector.gif b/docs/images/rectangle_selector.gif
diff --git a/docs/intro.md b/docs/intro.md
@@ -7,7 +7,7 @@ This package is not intended to be a napari plugin by itself, but it is intended
 
 ## Installation
 
-* Make sure you have Python in your computer, e.g. download [miniforge](https://github.com/conda-forge/miniforge?tab=readme-ov-file#download).
+* Make sure you have Python in your computer, e.g. download [miniforge](https://conda-forge.org/download/).
 
 * Create a new environment, for example, like this:
 

diff --git a/docs/selectors_api.md b/docs/selectors_api.md
@@ -209,6 +209,10 @@
    .. automethod:: on_button_press
    .. automethod:: remove
 
+   .. rubric:: Signals Documentation
+
+   .. autoattribute:: selection_applied_signal
+
    .. rubric:: Slots Methods Documentation
 
    .. automethod:: update_active_artist

diff --git a/pyproject.toml b/pyproject.toml
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
 
 [tool.black]
 line-length = 79
-target-version = ['py38', 'py39', 'py310']
+target-version = ['py39', 'py310', 'py311', 'py312']
 
 
 [tool.ruff]
@@ -52,5 +52,5 @@ exclude = [
     "*_vendor*",
 ]
 
-target-version = "py39"
+target-version = "py310"
 fix = true
diff --git a/setup.cfg b/setup.cfg
@@ -20,6 +20,8 @@ classifiers =
     Programming Language :: Python :: 3 :: Only
     Programming Language :: Python :: 3.9
     Programming Language :: Python :: 3.10
+    Programming Language :: Python :: 3.11
+    Programming Language :: Python :: 3.12
     Topic :: Scientific/Engineering :: Image Processing
 project_urls =
     Bug Tracker = https://github.com/BiAPoL/biaplotter/issues

diff --git a/src/biaplotter/__init__.py b/src/biaplotter/__init__.py
@@ -1,8 +1,15 @@
-__version__ = "0.0.5alpha.3"
+__version__ = "0.0.6"
+from .artists import Histogram2D, Scatter
+from .colormap import BiaColormap
 from .plotter import CanvasWidget
-from .artists import Scatter, Histogram2D
-from .selectors import InteractiveRectangleSelector, InteractiveEllipseSelector, InteractiveLassoSelector
+from .selectors import (InteractiveEllipseSelector, InteractiveLassoSelector,
+                        InteractiveRectangleSelector)
 
 __all__ = (
-    "CanvasWidget", "Scatter", "Histogram2D", "InteractiveRectangleSelector", "InteractiveEllipseSelector", "InteractiveLassoSelector"
+    "CanvasWidget",
+    "Scatter",
+    "Histogram2D",
+    "InteractiveRectangleSelector",
+    "InteractiveEllipseSelector",
+    "InteractiveLassoSelector",
 )