GIsubtype

The goal of GIsubtype is to panGI cancer subtype.

Installation

You can install the development version of GIsubtype from GitHub with:

# install.packages("devtools")
devtools::install_github("BioSong/GIsubtype")

Example

This is a basic example which shows you how to solve a common problem:

library(GIsubtype)
## basic example code
res <- GIclassifier(ExamExp,idType="SYMBOL")
#> Checking input dataset and parameters......
#> Transforming the input gene expression profile into dataframe format.
#> Making molecular subtype prediction......

You’ll still need to render README.Rmd regularly, to keep README.md up-to-date. devtools::build_readme() is handy for this.

In that case, don’t forget to commit and push the resulting figure files, so they display on GitHub and CRAN.