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martensonmartenson
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Merge pull request #94 from CESNET/iwc-update-galaxy-qa1.galaxy.cloud.e-infra.cz
Install IWC tools for galaxy-qa1.galaxy.cloud.e-infra.cz
2 parents 8b7fa72 + 96a2b22 commit d530652

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88 files changed

+2076
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‎galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml‎

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owner: iuc
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- name: funannotate_sort
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owner: iuc
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- name: staramr
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owner: iuc
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- name: amrfinderplus
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owner: iuc
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- name: isescan
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owner: iuc
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- name: integron_finder
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owner: iuc
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- name: bakta
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owner: iuc
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- name: repeatmodeler
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owner: csbl
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- name: prodigal
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owner: iuc
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- name: argnorm
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owner: iuc
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- name: mmseqs2_taxonomy_assignment
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owner: iuc
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- name: busco
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owner: iuc
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- name: ncbi_fcs_adaptor
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owner: richard-burhans
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- name: compleasm
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owner: iuc
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- name: helixer
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owner: genouest
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- name: omark
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owner: iuc

‎galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock‎

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install_repository_dependencies: true
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install_repository_dependencies: false
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install_resolver_dependencies: false
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install_tool_dependencies: false
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tools:
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- name: abricate
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: column_maker
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owner: devteam
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: staramr
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: amrfinderplus
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owner: iuc
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: isescan
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: integron_finder
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: bakta
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: repeatmodeler
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owner: csbl
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: prodigal
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: argnorm
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: mmseqs2_taxonomy_assignment
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owner: iuc
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revisions:
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: busco
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owner: iuc
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revisions:
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- 4e70d88adf2f
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: ncbi_fcs_adaptor
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owner: richard-burhans
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: compleasm
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owner: iuc
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: helixer
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owner: genouest
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation
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- name: omark
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owner: iuc
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tool_panel_section_id: annotation
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tool_panel_section_label: Annotation

‎galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml‎

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- name: bellerophon
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- name: quast
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- name: megahit
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owner: iuc
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- name: metaspades
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owner: nml
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- name: merqury
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- name: meryl_count_kmers
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owner: iuc
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- name: meryl_groups_kmers
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owner: iuc
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- name: meryl_histogram_kmers
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owner: iuc
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- name: hifiasm
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owner: bgruening
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- name: pretext_map
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owner: iuc
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- name: pretext_graph
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owner: iuc
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- name: genomescope
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owner: iuc
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- name: yahs
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owner: iuc
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- name: pairtools_parse
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owner: iuc
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- name: pairtools_dedup
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owner: iuc
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- name: racon
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owner: bgruening

‎galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock‎

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install_repository_dependencies: true
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tools:
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owner: bgruening
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tool_panel_section_id: assembly
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- name: mitobim
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owner: bgruening
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tool_panel_section_id: assembly
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- name: velvet
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tool_panel_section_id: assembly
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- name: quast
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owner: iuc
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tool_panel_section_id: assembly
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- name: megahit
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owner: iuc
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tool_panel_section_label: Assembly
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- name: metaspades
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owner: nml
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tool_panel_section_id: assembly
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- name: merqury
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tool_panel_section_id: assembly
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tool_panel_section_label: Assembly
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- name: meryl_count_kmers
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owner: iuc
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tool_panel_section_id: assembly
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tool_panel_section_label: Assembly
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- name: meryl_groups_kmers
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owner: iuc
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tool_panel_section_id: assembly
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tool_panel_section_label: Assembly
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- name: meryl_histogram_kmers
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owner: iuc
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tool_panel_section_id: assembly
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tool_panel_section_label: Assembly
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- name: hifiasm
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owner: bgruening
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tool_panel_section_id: assembly
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- name: pretext_map
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owner: iuc
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tool_panel_section_id: assembly
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- name: pretext_graph
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owner: iuc
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- name: genomescope
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owner: iuc
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tool_panel_section_label: Assembly
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- name: yahs
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owner: iuc
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- name: pairtools_parse
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owner: iuc
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tool_panel_section_id: assembly
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tool_panel_section_label: Assembly
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- name: pairtools_dedup
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owner: iuc
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tool_panel_section_label: Assembly
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- name: racon
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owner: bgruening
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tool_panel_section_id: assembly
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tool_panel_section_label: Assembly

‎galaxy-qa1.galaxy.cloud.e-infra.cz/bed.yml.lock‎

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install_repository_dependencies: true
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install_repository_dependencies: false
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install_tool_dependencies: false
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- name: bedtools
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owner: iuc
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revisions:
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- 2892111d91f8
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tool_panel_section_id: bed

‎galaxy-qa1.galaxy.cloud.e-infra.cz/biodiversity_data_exploration.yml.lock‎

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install_repository_dependencies: true
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install_repository_dependencies: false
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‎galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml‎

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- name: gmx_rmsf
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- name: openbabel_compound_convert
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owner: bgruening
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- name: qcxms_neutral_run
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owner: recetox
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- name: qcxms_production_run
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owner: recetox
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- name: qcxms_getres
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owner: recetox

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