Skip to content

add cache_directory_cacher_type container_resolvers option #219

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
18 changes: 13 additions & 5 deletions group_vars/galaxyservers.yml
Original file line number Diff line number Diff line change
Expand Up @@ -172,11 +172,19 @@ galaxy_config:
- /cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml
# Tool Dependencies
container_resolvers:
- type: explicit_singularity
- cache_directory: /cvmfs/singularity.galaxyproject.org/all/
type: cached_mulled_singularity
- auto_install: true
type: mulled_singularity
- type: explicit_singularity
- type: cached_mulled_singularity
cache_directory: /cvmfs/singularity.galaxyproject.org/all/
cache_directory_cacher_type: dir_mtime
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I can't find a documentation for this. WHat is the default?

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

# dependency_resolvers:
# - type: conda
# - type: tool_shed_packages
# - type: galaxy_packages
# - type: galaxy_packages
# versionless: true
# - type: conda
# versionless: true

# Data Library Directories
library_import_dir: "{{ csnt_library_import_dir }}"
user_library_import_dir: "{{ csnt_user_library_import_dir }}"
Expand Down
6 changes: 3 additions & 3 deletions templates/galaxy/config/tpv_rules_meta.yml.j2
Original file line number Diff line number Diff line change
Expand Up @@ -43,15 +43,15 @@ tools:
gpus: 1
context:
walltime: 24
scratch: 25
scratch: 25
gpu_mem: 16
scheduling:
scheduling:
require:
- rosettafold

rosettafold2:
inherits: testing_rosettafold2
scheduling:
scheduling:
require:
- singularity

Expand Down