Code for the simulations, figures, and movies from "Phase Resetting in an Asymptotically Phaseless System"

This repository contains the code used to generate the figures and movies for the following paper:

Shaw KM, Park Y-M, Chiel HJ, Thomas PJ. Phase Resetting in an Asymptotically Phaseless System: On the Phase Response of Limit Cycles Verging on a Heteroclinic Orbit. SIAM Journal on Applied Dynamical Systems 2012;11:350–391.

Published version: http://epubs.siam.org/siads/resource/1/sjaday/v11/i1/p350_s1

Preprint (freely downloadable): http://arxiv.org/abs/1103.5647

To generate the various figures from the paper, you will need to run the following commands:

python generate_figures.py
python generate_figures_ml.py
octave irisprc_coupling_check.m

To generate the movies from the paper, you will need to run

python generate_movies.py

Note that these scripts require the user to have installed python 2.6 or above, scipy, matplotlib, mencoder, and mplex.