Update lsdb version and remove universal_pathlib in requirements.txt

[jaladh-singhal]

astronomy-commons/lsdb#1047 (comment) - the bug with universal_pathlib got resolved

[troyraen]

Also remove it from the pip install cell in the notebook.

[jaladh-singhal]

Also remove it from the pip install cell in the notebook.

Jinx, just did!

[jaladh-singhal]

I re-ran buildhtml and build-docs pipeliens, but they are still failing because of some unrelated error:

For build-docs, it's:

py312-buildhtml: commands[9]> bash -c 'if grep -q '"'"'Traceback .most recent call last.'"'"' /tmp/mystbuild.log; then exit 1; fi'
py312-buildhtml: commands[10]> bash -c 'rm _build/html/*thebe*.js'
rm: cannot remove '_build/html/*thebe*.js': No such file or directory
py312-buildhtml: exit 1 (0.01 seconds) /home/circleci/project> bash -c 'rm _build/html/*thebe*.js' pid=3085
  py312-buildhtml: FAIL code 1 (183.08=setup[75.65]+cmd[0.44,0.00,0.05,0.03,0.00,0.00,0.00,0.04,106.84,0.01,0.01] seconds)
  evaluation failed :( (183.12 seconds)

For buildhtml, it was the same rm: cannot remove '_build/html/*thebe*.js': No such file or directory error in the first run. Now it's just SIGTERM (exit code 143)

[bsipocz]

I would carefully double check what other implicit dependency changes would this jump in version mean, lsdb notorious with its hats --> nested_pandas-->pandas and pyarrow chains of requirements and aggressively pinning those.

[bsipocz]

OK, I've checked the chain of deps and it looks OK.

(well, I still don't like how they upper pin, but we can't do much about that, what's important here is that this doesn't bring in any changes to the minimums).

[bsipocz]

FYI, this error suggest a running out of resources. Let's see if it's consistently around or not.

📖 Built tutorials/firefly/OpenUniverse2024Preview_Firefly.md in 1.38 min.
📖 Built tutorials/euclid_access/1_Euclid_intro_MER_images.md in 1.73 min.
Kernel: restarting (1627a44f-7572-46f7-b03e-213b88fe0283)
Kernel: autorestarting (1627a44f-7572-46f7-b03e-213b88fe0283)
Connection lost, reconnecting in 0 seconds.
Starting WebSocket: ws://localhost:8888/api/kernels/1627a44f-7572-46f7-b03e-213b88fe0283
Canceled future for execute_request message before replies were done


Myst CLI Versions:
 - node                        22.20.0     Required: >= 18.0.0      
 - npm                          10.9.3     Required: >=8.6.0        
 - myst                          1.6.0     


py312-buildhtml: commands[9]> bash -c 'if grep -q '"'"'Traceback .most recent call last.'"'"' /tmp/mystbuild.log; then exit 1; fi'
py312-buildhtml: commands[10]> bash -c 'rm _build/html/*thebe*.js'
rm: cannot remove '_build/html/*thebe*.js': No such file or directory
py312-buildhtml: exit 1 (0.00 seconds) /home/circleci/project> bash -c 'rm _build/html/*thebe*.js' pid=3092
  py312-buildhtml: FAIL code 1 (210.73=setup[89.83]+cmd[0.49,0.01,0.04,0.04,0.00,0.00,0.00,0.03,120.28,0.00,0.00] seconds)
  evaluation failed :( (210.76 seconds)

[bsipocz]

Thanks @jaladh-singhal!