Releases · CanDIG/CanDIGv3

Putting this up as a touchstone for the release to the DHDP dev servers:

Improvements to the frontend, enabling genomic search, and further fixes to both the Beacon search and the Phenopackets update, and the ingest protocol

What's Changed

CanDIG/htsget_app merging: DIG-2080: find analysis date in vcf files by @mshadbolt in #38
remove unused submodules by @mshadbolt in #36
DIG-2240: Fix the fake error that happens during candig-api setup by @daisieh in #37
Merge latest Phenopackets export into stack by @mshadbolt in #39
CanDIG/candig-api merging: Update dispatch and fix Dataset Filtering by @candigbot in #40
CanDIG/candig-api merging: fix response type on preapproved endpoint by @candigbot in #42
CanDIG/candig-opa merging: Update dispatch-actions.yml by @candigbot in #43
CanDIG/candig-api merging: DIG-2217: Commenting and refactoring phenopackets export by @candigbot in #44
CanDIG/candig-api merging: DIG-2233-clean up readme by @candigbot in #45
CanDIG/candig-api merging: Unit tests - DIG-2142 by @candigbot in #46
Merge DIG-2223/DIG-2225 PRs from data-portal by @OrdiNeu in #48
CanDIG/candig-api merging: DIG-2213: Remove or adapt code for endpoints we don"t use by @candigbot in #49
CanDIG/candig-opa merging: Add the /persons/ beacon endpoint by @candigbot in #47
Bugfix/auth code by @OrdiNeu in #31
CanDIG/candig-api merging: Fixup: Use AND between categories, and OR within categories of filtering by @candigbot in #51
CanDIG/htsget_app merging: DIG-2209: change drs experiment to biosample by @candigbot in #52
CanDIG/candig-api merging: Refactor to Phenopackets Library and Add more OMOP mappings by @candigbot in #53
Merge auth fix PR by @OrdiNeu in #54
Beacon integration tests by @OrdiNeu in #50
add larger test dataset by @mshadbolt in #55
CanDIG/candig-api merging: Speed up descendent search via a JOIN on omop.concept_ancestor by @candigbot in #56
CanDIG/candig-api merging: Update test_get_biosample.py by @candigbot in #59
CanDIG/candig-api merging: DIG-2216: Fix hardcoded response type by @candigbot in #60
add sample table DIG-2265 by @SonQBChau in #62
CanDIG/candig-api merging: DIG-2267 add samples by @candigbot in #65
update test data due to ETL updates by @mshadbolt in #63
Bump minimatch from 9.0.5 to 9.0.9 in /docs in the npm_and_yarn group across 1 directory by @dependabot[bot] in #66
Bump tar from 6.2.1 to 7.5.11 in /docs in the npm_and_yarn group across 1 directory by @dependabot[bot] in #67
Bump ajv from 8.17.1 to 8.18.0 in /docs in the npm_and_yarn group across 1 directory by @dependabot[bot] in #68
Bump devalue from 5.1.1 to 5.6.3 in /docs in the npm_and_yarn group across 1 directory by @dependabot[bot] in #69
DIG-2244: Add Data Access Request form by @mshadbolt in #58
Bump svgo from 3.3.2 to 3.3.3 in /docs in the npm_and_yarn group across 1 directory by @dependabot[bot] in #71
Bump rollup from 4.44.0 to 4.59.0 in /docs in the npm_and_yarn group across 1 directory by @dependabot[bot] in #72
CanDIG/htsget_app merging: DIG-2067: Add fastq files to test files by @candigbot in #64
CanDIG/candig-api merging: DIG-2157: Finish mapping OMOP-> phenopackets by @candigbot in #73
DIG-2199: Genomic ingest by @daisieh in #75
CanDIG/htsget_app merging: Indexing fixes for v3 by @candigbot in #77
Bump the npm_and_yarn group across 1 directory with 9 updates by @dependabot[bot] in #74
Bump the npm_and_yarn group across 1 directory with 2 updates by @dependabot[bot] in #81
Update test_integration.py by @SonQBChau in #82
CanDIG/candig-api merging: Sample tests by @candigbot in #84
CanDIG/candig-api merging: DIG-2236 phenopackets export integration tests by @candigbot in #83
DIG 2172 Fix Errors/inconsistencies with response bodies and schemas by @SonQBChau in #86
CanDIG/candig-api merging: DIG-2224: Variants search by @candigbot in #80