GitHub - CellProfiler/notebooks: Jupyter notebooks for CellProfiler and friends

Welcome to the CellProfiler Jupyter notebooks!

Click an .ipynb file to browse it statically.

To run a notebook locally, install Conda and then run:

conda env create -f environment.yml
source activate cellprofiler-notebooks
jupyter notebook

Your browser will open a localhost URL, and you can play around!

To learn more about Jupyter, visit the Jupyter Notebook Quick Start Guide.

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
data		data
.gitignore		.gitignore
README.md		README.md
cellprofiler_demo.ipynb		cellprofiler_demo.ipynb
cellprofiler_with_imagej_pyjnius.ipynb		cellprofiler_with_imagej_pyjnius.ipynb
cellprofiler_with_imagej_server.ipynb		cellprofiler_with_imagej_server.ipynb
environment.yml		environment.yml
imagej_pyjnius_demo.ipynb		imagej_pyjnius_demo.ipynb
imagej_server_demo.ipynb		imagej_server_demo.ipynb

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