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Issues about FAST-iCLIP pipeline

Status: Open.

#35 In ChangLab/FAST-iCLIP;

· Zzy190516 opened on Dec 24, 2024

Can't run example data - error "re-reun with the -g option for a genome file"

Status: Open.

#33 In ChangLab/FAST-iCLIP;

· natsampaio opened on Jun 20, 2018

Can't run the example.

Status: Open.

#32 In ChangLab/FAST-iCLIP;

· AmirArgoetti opened on Nov 19, 2017

FAST-iCLIP/docs/GRCm38/exons.bed has the same start and end coordinate

Status: Open.

#31 In ChangLab/FAST-iCLIP;

· Shirleyyyyyy opened on Jul 13, 2017

Not able to run example

Status: Open.

#30 In ChangLab/FAST-iCLIP;

· marencc opened on Jul 4, 2017

Support cases when there are 0 retroviral reads

Status: Open.

#27 In ChangLab/FAST-iCLIP;

· bdo311 opened on Jun 23, 2017

Bowtie prints out results as "error"

Status: Open.

#26 In ChangLab/FAST-iCLIP;

· bdo311 opened on Jun 23, 2017

problem in provided annotations

Status: Open.

#25 In ChangLab/FAST-iCLIP;

· andypohl opened on Jun 22, 2017

expected output for example?

Status: Open.

#24 In ChangLab/FAST-iCLIP;

· andypohl opened on Jun 22, 2017

fails with samtools >1.3

Status: Open.

#20 In ChangLab/FAST-iCLIP;

· dy7t opened on May 1, 2016

retroviralMapping.py must be exectuded in FAST-iCLIP directory

Status: Open.

#19 In ChangLab/FAST-iCLIP;

· EricDeveaud opened on Apr 4, 2016

motifAnalysis.py can't find docs if executed outside of FAST-iCLIP directory

Status: Open.

#18 In ChangLab/FAST-iCLIP;

· EricDeveaud opened on Apr 4, 2016