A method based on graphical model for cancer regulatory network inference and prioritization of potential therapeutic targets
If you have installed devtools package, you only need to call install_github function in devtools to install nemTar.
Please refer to the following commands to install **nemTar**
install.packages("devtools")
devtools::install_github("CityUHK-CompBio/nemTar", dependencies=TRUE)
nemTar requires the following R/Bioconductor packages for its normal function:
- nem (Bioconductor, version 2.60.0 is preferred)
- dplyr(version 0.8.5 is preferred)
A toy example on simulated network and two case studies involved in GC and CRC could be found in our vignette.
nemTar also provides a manual to introcuce the main functions in our package.
Should you have any questions about this package, you can either email to the developers listed in the DESCRIPTION part of this package or create an issue in the issue part.