Release 4.17.2

Update pangolin in production (#182)

• Update default_config.json

• update gms-arctic version

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Co-authored-by: karlnyr kallejohan211@hotmail.com

Release 4.17.1

Merge pull request #181 from Clinical-Genomics/improveprovidedinfo

The purpose of the code changes are as follows:

• Added information about what the pipeline does in words. What MUTANT does/analyses.

Release 4.17.0

Lower qc threshold (#180) (minor)

• Lower qc threshold

Release 4.16.1

change delivery of vcf to case level

Release 4.16.0

Merge pull request #171 from Clinical-Genomics/update_threshold(minor)

Added

• Update the iVarFrequency threshold
• Fix typo to be consistent with gms-artic pipeline

Release 4.15.0

Merge pull request #164 from Clinical-Genomics/nextclade_summaryfile (minor)

Added

• nextclade summary parser

Release 4.14.2

Merge pull request #165 from Clinical-Genomics/add-2-bl

Create add-to-bl.yml

Release 4.14.1

Merge pull request #159 from Clinical-Genomics/container-split

Container split

Release 4.14.0

Merge pull request #158 from Clinical-Genomics/rename-files (minor)

New gms-artic version and change name of files for nanopore analyses

Release 4.13.0

Merge pull request #156 from Clinical-Genomics/additional-deliverables (minor)

Add pangolin FOHM file and deliverables file