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Fixed duplicate parameter -s in genmod models #202

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Merged
fellen31 merged 3 commits into from
Mar 19, 2026
Merged

Fixed duplicate parameter -s in genmod models #202

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020d95f
We already have a -s,--silent parameter
fellen31 Mar 10, 2026
654a406
Merge branch 'main' into fix-duplicate-parameter
dnil Mar 18, 2026
d75de64
Merge branch 'main' into fix-duplicate-parameter
fellen31 Mar 19, 2026
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -15,6 +15,7 @@ Try to use the following format:
- Sorting command more inclusive for e.g. BusyBox sort for containers built with Bioconda ([#198](https://github.com/Clinical-Genomics/genmod/pull/198))
- Fix symbolic SVs being silently dropped when sharing the same CHROM,POS and REF ([#191](https://github.com/Clinical-Genomics/genmod/pull/191))
- Print header in `genmod models` when running with `--processes 1` ([#199](https://github.com/Clinical-Genomics/genmod/pull/199))
- Fixed duplicate parameter `-s` in genmod models ([#202](https://github.com/Clinical-Genomics/genmod/pull/202))

## [3.10.2]
### Fixed
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3 changes: 1 addition & 2 deletions genmod/commands/annotate_models.py
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Expand Up @@ -64,7 +64,6 @@
)
@click.option("--phased", is_flag=True, help="If data is phased use this flag.")
@click.option(
"-s",
"--strict",
is_flag=True,
help="If strict model annotations should be used(see documentation).",
Expand All @@ -78,7 +77,7 @@
"-k",
"--keyword",
default="Annotation",
help="""What annotation keyword that should be used when
help="""What annotation keyword that should be used when
searching for features.""",
)
@outfile
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