Fix tests by pulling mongo image from ecr.aws instead of Docker Hub

[northwestwitch]

This PR adds a functionality or fixes a bug.

• Fix Reached our docker pull rate limit? #5222 - Using a recent feature of the GitHub action, see this PR

Testing on cg-vm1 server (Clinical Genomics Stockholm)

Prepare for testing

1. Make sure the PR is pushed and available on Docker Hub
2. Fist book your testing time using the Pax software available at https://pax.scilifelab.se/. The resource you are going to call dibs on is scout-stage and the server is cg-vm1.
3. ssh <USER.NAME>@cg-vm1.scilifelab.se
4. sudo -iu hiseq.clinical
5. ssh localhost
6. (optional) Find out which scout branch is currently deployed on cg-vm1: podman ps
7. Stop the service with current deployed branch: systemctl --user stop scout.target
8. Start the scout service with the branch to test: systemctl --user start scout@<this_branch>
9. Make sure the branch is deployed: systemctl --user status scout.target
10. After testing is done, repeat procedure at https://pax.scilifelab.se/, which will release the allocated resource (scout-stage) to be used for testing by other users.

Testing on hasta server (Clinical Genomics Stockholm)

Prepare for testing

1. ssh <USER.NAME>@hasta.scilifelab.se
2. Book your testing time using the Pax software. us; paxa -u <user> -s hasta -r scout-stage. You can also use the WSGI Pax app available at https://pax.scilifelab.se/.
3. (optional) Find out which scout branch is currently deployed on cg-vm1: conda activate S_scout; pip freeze | grep scout-browser
4. Deploy the branch to test: bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_scout -t scout -b <this_branch>
5. Make sure the branch is deployed: us; scout --version
6. After testing is done, repeat the paxa procedure, which will release the allocated resource (scout-stage) to be used for testing by other users.

How to test:

1. how to test it, possibly with real cases/data

Expected outcome:
The functionality should be working
Take a screenshot and attach or copy/paste the output.

Review:

• code approved by
• tests executed by GitHub actions

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 84.42%. Comparing base (00dc9b1) to head (113ef90).

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #5220   +/-   ##
=======================================
  Coverage   84.42%   84.42%           
=======================================
  Files         327      327           
  Lines       19830    19830           
=======================================
  Hits        16741    16741           
  Misses       3089     3089           

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[northwestwitch]

Marking this PR as a draft. Tests are working again all of a sudden so perhaps it was a temporary hiccup in the actions. Let's see how it goes!

[northwestwitch]

Closing this PR for now, but let's remember it exists if that problem shows up again

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud