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cli #45

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1454b6c
draft
Sep 17, 2025
c07d26b
revise cli
Sep 17, 2025
fd17e2d
fix path for test dataset
Jan 23, 2026
e280a90
add colrev dependency for bib-dedupe[cli]
Jan 23, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ jobs:
run: |
pip install uv
uv venv
uv pip install -e .[dev] || echo "No dev extra"
uv pip install -e .[dev,cli] || echo "No dev extra"
echo "Dependencies installed successfully"

- name: Setup git
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6 changes: 5 additions & 1 deletion bib_dedupe/bib_dedupe.py
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Expand Up @@ -14,6 +14,7 @@
import bib_dedupe.merge
import bib_dedupe.prep
from bib_dedupe import verbose_print
from bib_dedupe.constants.fields import ORIGIN


def prep(
Expand Down Expand Up @@ -147,6 +148,7 @@ def merge(
matched_df: typing.Optional[pd.DataFrame] = None,
duplicate_id_sets: typing.Optional[list] = None,
verbosity_level: typing.Optional[int] = None,
origin_column: str = ORIGIN,
) -> pd.DataFrame:
"""
Merges duplicate records in the given dataframe.
Expand All @@ -173,7 +175,9 @@ def merge(
matched_df = match(blocked_df)
duplicate_id_sets = bib_dedupe.cluster.get_connected_components(matched_df)

return bib_dedupe.merge.merge(records_df, duplicate_id_sets=duplicate_id_sets)
return bib_dedupe.merge.merge(
records_df, duplicate_id_sets=duplicate_id_sets, origin_column=origin_column
)


def _download_file_from_github(url: str, local_path: str) -> None:
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