feat: Support MedCAT v2 #114
Workflow file for this run
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| name: docker | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| env: | |
| REGISTRY: docker.io | |
| DOCKER_IMAGE_NAME: cogstacksystems/cogstack-modelserve | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| container: hadolint/hadolint:latest-debian | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Lint | |
| run: hadolint --ignore DL3008 --ignore DL3013 --ignore DL3003 --ignore DL4006 docker/Dockerfile* docker/**/Dockerfile* | |
| build-and-push: | |
| needs: lint | |
| if: | | |
| github.repository == 'CogStack/CogStack-ModelServe' && | |
| ( | |
| github.ref == 'refs/heads/main' || | |
| github.event_name == 'pull_request' || | |
| github.event_name == 'workflow_dispatch' | |
| ) | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| id-token: write | |
| attestations: write | |
| concurrency: build-and-push | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Extract CMS meta | |
| id: cms_meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.DOCKER_IMAGE_NAME }} | |
| tags: | | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| type=schedule | |
| type=ref,event=branch | |
| type=ref,event=tag | |
| type=ref,event=pr | |
| type=sha | |
| type=match,pattern=cogstack-modelserve/v(\d+\.\d+\.\d+),group=1 | |
| - name: Build and push CMS | |
| uses: docker/build-push-action@v6 | |
| id: build_and_push_cms | |
| with: | |
| platforms: linux/amd64,linux/arm64 | |
| context: . | |
| file: docker/Dockerfile | |
| push: true | |
| tags: ${{ steps.cms_meta.outputs.tags }} | |
| labels: ${{ steps.cms_meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| - name: Attest image artifacts | |
| uses: actions/attest-build-provenance@v2 | |
| id: attest | |
| with: | |
| subject-name: ${{ env.REGISTRY }}/${{ env.DOCKER_IMAGE_NAME }} | |
| subject-digest: ${{ steps.build_and_push_cms.outputs.digest }} | |
| push-to-registry: true | |
| - name: Update Docker Hub description | |
| if: github.ref == 'refs/heads/main' && github.event_name != 'pull_request' | |
| uses: peter-evans/dockerhub-description@v4 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| repository: ${{ env.DOCKER_IMAGE_NAME }} | |
| readme-filepath: ./README.md | |
| smoke-test: | |
| needs: build-and-push | |
| if: | | |
| github.repository == 'CogStack/CogStack-ModelServe' && | |
| ( | |
| github.ref == 'refs/heads/main' || | |
| github.event_name == 'pull_request' || | |
| github.event_name == 'workflow_dispatch' | |
| ) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download the test model | |
| run: | | |
| wget -O test_model.zip https://cogstack-medcat-example-models.s3.eu-west-2.amazonaws.com/medcat-example-models/medmen_wstatus_2021_oct.zip | |
| - name: Run the CMS container | |
| run: | | |
| SHORT_SHA=$(echo ${{ github.sha }} | cut -c1-7) | |
| docker run -d --name cms-test \ | |
| -p 8000:8000 \ | |
| -e CMS_MODEL_NAME="Test Model" \ | |
| -e CMS_MODEL_TYPE="medcat_umls" \ | |
| -v $(pwd)/test_model.zip:/app/model/model.zip \ | |
| ${{ env.REGISTRY }}/${{ env.DOCKER_IMAGE_NAME }}:sha-${SHORT_SHA} | |
| - name: Wait for the CMS container to be ready | |
| run: | | |
| for i in {1..30}; do | |
| if curl -f http://localhost:8000/readyz; then | |
| exit 0 | |
| fi | |
| sleep 10 | |
| done | |
| echo "CMS did not become ready in time" | |
| exit 1 |