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Fix silent crash due to XGBoost-CUDA environment variable incompatibility #216

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Merged
RalfG merged 1 commit into from
Apr 2, 2025
+10 −4
Merged

Fix silent crash due to XGBoost-CUDA environment variable incompatibility #216

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12 changes: 8 additions & 4 deletions ms2rescore/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,10 @@
"""MS²Rescore: Sensitive PSM rescoring with predicted MS² peak intensities and RTs."""
"""Modular and user-friendly platform for AI-assisted rescoring of peptide identifications ."""

__version__ = "3.2.0.dev1"
__version__ = "3.2.0.dev2"
__all__ = [
"parse_configurations",
"rescore",
]

from warnings import filterwarnings

Expand All @@ -12,5 +16,5 @@
module="psims.mzmlb",
)

from ms2rescore.config_parser import parse_configurations # noqa: F401 E402
from ms2rescore.core import rescore # noqa: F401 E402
from ms2rescore.config_parser import parse_configurations # noqa: E402
from ms2rescore.core import rescore # noqa: E402
2 changes: 2 additions & 0 deletions ms2rescore/feature_generators/ms2pip.py
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Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@

import logging
import multiprocessing
import os
import warnings
from itertools import chain
from typing import List, Optional, Union
Expand Down Expand Up @@ -194,6 +195,7 @@ def add_features(self, psm_list: PSMList) -> None:
spectrum_filename = infer_spectrum_path(self.spectrum_path, run)
logger.debug(f"Using spectrum file `{spectrum_filename}`")
try:
os.environ.pop("CUDA_VISIBLE_DEVICES", None)
ms2pip_results = correlate(
psms=psm_list_run,
spectrum_file=str(spectrum_filename),
Expand Down