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update,tests: update sage and idxml tests
- add ion mobility and predicted filed to test_psm obj - update expected hash in idxml test for outputed sage idxml
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tests/test_data/test_out_sage.idXML

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@@ -27,6 +27,7 @@
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<UserParam type="float" name="delta_rt_model" value="0.993444"/>
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<UserParam type="float" name="aligned_rt" value="0.993444"/>
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<UserParam type="float" name="predicted_rt" value="0.0"/>
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<UserParam type="float" name="predicted_mobility" value="0.0"/>
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<UserParam type="float" name="matched_peaks" value="22.0"/>
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<UserParam type="float" name="longest_b" value="9.0"/>
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<UserParam type="float" name="longest_y" value="12.0"/>

tests/test_io/test_idxml.py

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@@ -107,7 +107,7 @@ def test_write_file_with_pyopenms_objects(self):
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assert sha == expected_sha
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def test_write_file_without_pyopenms_objects(self):
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expected_sha = "148889926276fbe391e23ed7952c3a8410fc67ffb099bbf1a72df75f8d727ccd"
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expected_sha = "3b227edf1649021a01feb706e3b3effb939d4fdeccb4cd7111be30bb2e6280e7"
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reader = SageTSVReader("./tests/test_data/results.sage.tsv")
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psm_list = reader.read_file()
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writer = IdXMLWriter("./tests/test_data/test_out_sage.idXML")

tests/test_io/test_sage.py

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@@ -17,7 +17,7 @@
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pep=None,
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precursor_mz=643.0349916987367,
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retention_time=108.2854,
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ion_mobility=None,
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ion_mobility=0.0,
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protein_list=["sp|Q99536|VAT1_HUMAN"],
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rank=1,
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source="sage",
@@ -36,6 +36,7 @@
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"delta_rt_model": 0.993444,
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"aligned_rt": 0.993444,
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"predicted_rt": 0.0,
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"predicted_mobility": 0.0,
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"matched_peaks": 22.0,
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"longest_b": 9.0,
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"longest_y": 12.0,

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