Releases: ComputationalEvolutionaryMorphometry/hyperiax
Releases · ComputationalEvolutionaryMorphometry/hyperiax
V2.0.2
v2.0.1
v2.0.0
V2 (#49) * initial v2 sketch * bad imports * more imports * major cleanup + loads of fixes and restructuring * local updates for fixed sized trees * removed a print * small rename * notebook update * Gaussian BFFG notebook updated to v2; parameters can be passed to down execution; mcmc updates; string representation of tree for printing * V2 - plot tree, iterations and tree building example #43 (#44) * plot tree, iterations and tree building example Transfer of plot tree function Addition of multiple iterations for transverse the tree in different orders update of example/tree_building.ipynb to illustrate how to setup a tree. * Update Tree building.ipynb Corrected name * Adding another topology tree Adding a read.tree function, for topologies defined as newick trees. * tree reading * V2 (#45) * plot tree, iterations and tree building example Transfer of plot tree function Addition of multiple iterations for transverse the tree in different orders update of example/tree_building.ipynb to illustrate how to setup a tree. * Update Tree building.ipynb Corrected name * Adding another topology tree Adding a read.tree function, for topologies defined as newick trees. * Added example Added example of upwards lddmm to hyperiax v.2 small change in read_topology from string, and renamed function * Read and write topology (#47) * plot tree, iterations and tree building example Transfer of plot tree function Addition of multiple iterations for transverse the tree in different orders update of example/tree_building.ipynb to illustrate how to setup a tree. * Update Tree building.ipynb Corrected name * Adding another topology tree Adding a read.tree function, for topologies defined as newick trees. * Added example Added example of upwards lddmm to hyperiax v.2 small change in read_topology from string, and renamed function * write_tree Updated the write_tree function, such that it is possible to both read and write a tree string to export the tree * Update Tree building.ipynb * Update Tree building.ipynb * Update Upwards_LDDMM.ipynb * Update topology.py name changes from tree to topology * Update topology.py * Instructions for building docs locally, rewritten tree_building and mean_estimation notebooks, and some changes for compiling notebooks Read and write topology (#47) * plot tree, iterations and tree building example Transfer of plot tree function Addition of multiple iterations for transverse the tree in different orders update of example/tree_building.ipynb to illustrate how to setup a tree. * Update Tree building.ipynb Corrected name * Adding another topology tree Adding a read.tree function, for topologies defined as newick trees. * Added example Added example of upwards lddmm to hyperiax v.2 small change in read_topology from string, and renamed function * write_tree Updated the write_tree function, such that it is possible to both read and write a tree string to export the tree * Update Tree building.ipynb * Update Tree building.ipynb * Update Upwards_LDDMM.ipynb * Update topology.py name changes from tree to topology * Update topology.py Another fix for doc building Another fix*2 on doc build Another fix*3 on doc build Read and write topology (#47) * plot tree, iterations and tree building example Transfer of plot tree function Addition of multiple iterations for transverse the tree in different orders update of example/tree_building.ipynb to illustrate how to setup a tree. * Update Tree building.ipynb Corrected name * Adding another topology tree Adding a read.tree function, for topologies defined as newick trees. * Added example Added example of upwards lddmm to hyperiax v.2 small change in read_topology from string, and renamed function * write_tree Updated the write_tree function, such that it is possible to both read and write a tree string to export the tree * Update Tree building.ipynb * Update Tree building.ipynb * Update Upwards_LDDMM.ipynb * Update topology.py name changes from tree to topology * Update topology.py Check notebooks * test fix --------- Co-authored-by: Stefan Sommer <sommer@di.ku.dk> Co-authored-by: MichaelSev <51700673+MichaelSev@users.noreply.github.com> Co-authored-by: Rickyang2233 <gefan_yang@163.com>