Conte Web System Workflow

This folder contains scripts and documents outlining the workflow for running the stream temperature model.

Inputs:

• catchments: shapefile of NHDplus catchments
• covariateData: dataset containing the covariate data for each catchment
• temperatureData: dataset containing observed stream temperatures as provided by various agencies
• climateData: dataset containing the climate data for each catchment

Outputs:

• mcmcOutput: output from JAGS containing MCMC runs
• modelSummary: summary of model parameters
• predictions: timeseries of predicted temperature for each catchment

The first step is to join the observed temperature data to the catchments