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Scheduled weekly dependency update for week 10 #674

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7b845ab
Update sphinx from 7.3.7 to 9.1.0
pyup-bot Mar 9, 2026
8250e43
Update furo from 2024.5.6 to 2025.12.19
pyup-bot Mar 9, 2026
c7444a3
Update sphinx-autobuild from 2024.4.16 to 2025.8.25
pyup-bot Mar 9, 2026
93e75f0
Update sphinx-sitemap from 2.6.0 to 2.9.0
pyup-bot Mar 9, 2026
7222749
Update sphinx-click from 5.0.1 to 6.2.0
pyup-bot Mar 9, 2026
781279e
Update sphinx-autodoc-typehints from 2.3.0 to 3.9.7
pyup-bot Mar 9, 2026
2489f38
Update setuptools from 80.9.0 to 82.0.1
pyup-bot Mar 9, 2026
99b6ca5
Update pytest from 8.3.5 to 9.0.2
pyup-bot Mar 9, 2026
76687fe
Update pytest-env from 1.1.5 to 1.5.0
pyup-bot Mar 9, 2026
9352032
Update pytest-mock from 3.14.0 to 3.15.1
pyup-bot Mar 9, 2026
2890311
Update fiftyone from 1.5.2 to 1.13.3
pyup-bot Mar 9, 2026
71afcef
Update datasets from 3.6.0 to 4.6.1
pyup-bot Mar 9, 2026
a78bcb0
Update ultralytics from 8.3.237 to 8.4.21
pyup-bot Mar 9, 2026
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12 changes: 6 additions & 6 deletions docs/requirements-docs.txt
View file
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
sphinx==7.3.7
furo==2024.5.6
sphinx-autobuild==2024.4.16
sphinx==9.1.0
furo==2025.12.19
sphinx-autobuild==2025.8.25
sphinx-copybutton==0.5.2
sphinx-sitemap==2.6.0
sphinx-click==5.0.1
sphinx-autodoc-typehints==2.3.0
sphinx-sitemap==2.9.0
sphinx-click==6.2.0
sphinx-autodoc-typehints==3.9.7
Comment on lines +1 to +7
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⚠️ Potential issue | 🟠 Major

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "Checking the upgraded docs requirements and current Sphinx autodoc config..."
sed -n '1,10p' docs/requirements-docs.txt
printf '\n--- docs/source/conf.py ---\n'
rg -n -C2 'autodoc_default_flags|autodoc_default_options' docs/source/conf.py

Repository: DagsHub/client

Length of output: 495

🌐 Web query:

Sphinx 9.1.0 autodoc_default_flags deprecated autodoc_default_options

💡 Result:

In Sphinx 9.1.0 (released Dec 31, 2025), autodoc_default_flags is long-deprecated and you should use autodoc_default_options instead. [1][2]

What changed / why you see the warning

  • autodoc_default_flags was deprecated in Sphinx 1.8. [3]
  • Sphinx 1.8 also introduced autodoc_default_options, which replaces the old “list of flags” with a dict of default directive options (option name → value). [4]

How to migrate (conf.py)

Old (deprecated):

autodoc_default_flags = ['members', 'undoc-members', 'show-inheritance']

New:

autodoc_default_options = {
    'members': True,
    'undoc-members': True,
    'show-inheritance': True,
}

Notes:

  • autodoc_default_options applies to all autodoc directives. [5]
  • Setting an option’s value to True (or None) is equivalent to specifying the flag with no value in the directive (e.g., :members:). [6]

Sources:
[1] Sphinx changelog (Release 9.1.0 date) (sphinx-doc.org)
[2] Sphinx changelog index / 9.1.0 section (sphinx-doc.org)
[3] Sphinx 1.8 changelog: “autodoc_default_flags is deprecated” (sphinx-doc.org)
[4] Sphinx 1.8 changelog: added autodoc_default_options (sphinx-doc.org)
[5] Autodoc docs: use autodoc_default_options for default directive options (sphinx-doc.org)
[6] Autodoc docs: True/None equals specifying the option name only (sphinx-doc.org)

Citations:

🏁 Script executed:

# Check if there's any additional config in docs/source/conf.py that might be relevant
cat -n docs/source/conf.py | head -100

Repository: DagsHub/client

Length of output: 3149

🌐 Web query:

Sphinx 9.1.0 changelog autodoc_default_flags removal breaking change

💡 Result:

Sphinx 9.1.0 (released Dec 31, 2025) does not list a breaking change removing autodoc_default_flags in its changelog; the only closely related autodoc entry is “autodoc: Fix default option parsing” (#14089). [1]

autodoc_default_flags was deprecated in Sphinx 1.8 and removed in Sphinx 4.0 (replacement: autodoc_default_options). So any “removal” break you’re seeing in 9.1.0 would be from carrying forward an already-removed setting, not a new 9.1.0 change. [2]

Sources: [1] [2]

🌐 Web query:

Sphinx 9.0.0 9.1.0 autodoc_default_flags dropped removed

💡 Result:

autodoc_default_flags was not dropped in Sphinx 9.0.0/9.1.0—it was deprecated in Sphinx 1.8 and removed in Sphinx 4.0. Use autodoc_default_options instead. [1][2]

Migration example (conf.py)

# old (no longer supported since Sphinx 4.0)
# autodoc_default_flags = ["members", "undoc-members"]

# new
autodoc_default_options = {
    "members": True,
    "undoc-members": True,
    # add others as needed, e.g.:
    # "inherited-members": True,
    # "show-inheritance": True,
}

Sphinx 9.0.0 did include a substantial autodoc rewrite (which can surface other edge-case incompatibilities), but it’s separate from the autodoc_default_flags removal. [3]

Sources: Sphinx “Deprecated APIs” (shows deprecated 1.8, removed 4.0) [1]; Sphinx 1.8 changelog (deprecates autodoc_default_flags and adds autodoc_default_options) [2]; Sphinx 9.0 changelog (autodoc rewrite) [3].

References:
[1] https://www.sphinx-doc.org/en/master/extdev/deprecated.html
[2] https://www.sphinx-doc.org/en/master/changes/1.8.html
[3] https://www.sphinx-doc.org/en/master/changes/9.0.html

🏁 Script executed:

# Check if there's a git history or previous requirements file
git log --oneline -n 20 -- docs/requirements-docs.txt 2>/dev/null || echo "No git history available"

# Also check if there's a pip lock file or setup.py that might show previous version
find . -name "setup.py" -o -name "setup.cfg" -o -name "pyproject.toml" | xargs grep -l "sphinx" 2>/dev/null | head -3

Repository: DagsHub/client

Length of output: 107

Update docs/source/conf.py to use autodoc_default_options.

docs/source/conf.py:68 uses autodoc_default_flags = ["inherited-members"], which was removed in Sphinx 4.0. Upgrading to Sphinx 9.1.0 will break the docs build unless this is updated to the current standard: autodoc_default_options.

🔧 Proposed change in docs/source/conf.py 
- autodoc_default_flags = ["inherited-members"]
+ autodoc_default_options = {
+     "members": True,
+     "inherited-members": True,
+ }

14 changes: 7 additions & 7 deletions requirements-dev.txt
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
setuptools==80.9.0
pytest==8.3.5
setuptools==82.0.1
pytest==9.0.2
respx==0.22.0
pytest-git==1.8.0
pytest-env==1.1.5
pytest-mock==3.14.0
fiftyone==1.5.2
datasets==3.6.0
ultralytics==8.3.237
pytest-env==1.5.0
pytest-mock==3.15.1
fiftyone==1.13.3
datasets==4.6.1
ultralytics==8.4.21
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