chore(deps): update alchemist to v39 (major)

[renovate]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
it.unibo.alchemist:alchemist-incarnation-scafi	38.0.3 -> 39.0.0
it.unibo.alchemist:alchemist-incarnation-protelis	38.0.3 -> 39.0.0
it.unibo.alchemist:alchemist	38.0.3 -> 39.0.0

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Release Notes

AlchemistSimulator/Alchemist (it.unibo.alchemist:alchemist-incarnation-scafi)

v39.0.0

Compare Source

⚠ BREAKING CHANGES

• massive refactor to apply modern code styles to the Java part of the codebase (#​4214)

Dependency updates

• deps: update plugin com.gradle.develocity to v3.19.2 (#​4215) (c280ff0)
• deps: update plugin java-qa to v1.97.2 (#​4209) (35b243a)
• deps: update react to v2025.2.6-19.0.0 (patch) (#​4216) (b04d254)

Documentation

• deps: update gohugoio/hugo action to v0.144.2 (#​4217) (1a897f9)

General maintenance

• build: update the javadoc.io cache (a584eed)

Style improvements

• api: fix comment indentation in Condition (7964a11)
• incarnation-sapere: add missing finals (b3d10f1)

Refactoring

• massive refactor to apply modern code styles to the Java part of the codebase (#​4214) (5ff4b5b)

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