Promotion 2026-01-06 prod (#7678)#7681

Merged

achave11-ucsc merged 137 commits intoprodfrom

promotions/2026-01-06-prod

Jan 9, 2026

Commits on Nov 20, 2025

Merge branch 'anvilprod' into promotions/2025-11-18-anvilprod
achave11-ucsc
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Commits on Nov 21, 2025

[R] Promotion 2025-11-18 anvilprod (#7577, PR #7588)
achave11-ucsc
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Commits on Nov 25, 2025

Merge branch 'anvilprod' into promotions/2025-11-25-anvilprod
dsotirho-ucsc
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Commits on Nov 26, 2025

[u r R a] Promotion 2025-11-25 anvilprod (#7594, PR #7595)
dsotirho-ucsc
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Commits on Dec 3, 2025

Merge branch 'anvilprod' into promotions/2025-12-02-anvilprod
dsotirho-ucsc
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Commits on Dec 5, 2025

[R a] Promotion 2025-12-02 anvilprod (#7605, PR #7613)
dsotirho-ucsc
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Commits on Dec 6, 2025

Extract method

nadove-ucsc
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Only inject file_url if it is defined in the manifest config

nadove-ucsc
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hannes-ucsc
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Commits on Dec 8, 2025

Add mirror URI column to compact manifest (#7151)
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Disable mirror URI column for AnVIL and add FIXME (#7154)
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Rename nested function

hannes-ucsc
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Rename variable

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Rename method

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Rename method

hannes-ucsc
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Refactor method to avoid negation

hannes-ucsc
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nadove-ucsc
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Expand utility of method, add usages

hannes-ucsc
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nadove-ucsc
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Commits on Dec 9, 2025

Commits on Dec 11, 2025

Refactor BigQuery column lookup in AnVIL plugin

nadove-ucsc
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Verify download size in mirror file service

nadove-ucsc
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[r] Fix: AnVIL uses uncommon encoding for MD5 digests (#7154)

nadove-ucsc
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Enable mirror URI column in compact AnVIL manifests (#7151)

nadove-ucsc
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[u] Enable mirroring in anvildev and anvilbox (#7214)

nadove-ucsc
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[u] Work around unmirrorable files in 1000G snapshot and add FIXME (#7634)

nadove-ucsc
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dsotirho-ucsc
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[u r] Enable mirroring in anvildev and anvilbox (#7154, #7214, PR #7223)
dsotirho-ucsc
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Commits on Dec 14, 2025

Commits on Dec 15, 2025

[R] Ran `make requirements_update`
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[R] Upgrade software dependencies 2025-12-08 (#7621, PR #7627)
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Remove unused special field root_entity_id

dsotirho-ucsc
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achave11-ucsc
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[r] Remove files.sha256 from AnVIL (#7005)

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[r] Remove files.crc32c from AnVIL (#7005)

dsotirho-ucsc
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[r] Remove files.uuid from AnVIL (#7005)

dsotirho-ucsc
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Promote type for inverse field mapping to top level

hannes-ucsc
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Fix typing of method, add docstring

hannes-ucsc
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Rename method

hannes-ucsc
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Add missing reference to special field

hannes-ucsc
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Implement abstract property with class attribute instead of property

hannes-ucsc
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Remove obvious comment

hannes-ucsc
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Remove redundant property override

hannes-ucsc
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Reorder methods

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Add documentation to field-related types

hannes-ucsc
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Rename method

hannes-ucsc
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Extract properties for app and plugin used by tests

hannes-ucsc
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Protect test class attribute

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Fix facet vs field misnomer

hannes-ucsc
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Allow for asymmetrically named special fields

hannes-ucsc
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Remove redundant ABCMeta declaration

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Push down DCP/1-specific method into DCP/1-specific subclass

hannes-ucsc
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achave11-ucsc
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Commits on Dec 16, 2025

Commits on Dec 17, 2025

Commits on Dec 18, 2025

[r H] Promotion 2025-12-16 anvilprod, enable mirroring (#7651, #7534, #7535, PR #7652)
achave11-ucsc
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Commits on Dec 19, 2025

[u r p] Index one snapshot from upcoming lm10 release in dev (#7617, PR #7648)
achave11-ucsc
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Commits on Dec 27, 2025

Commits on Dec 29, 2025

Commits on Jan 3, 2026

[H] Backport e72fc7a9 (#7662, PR #7668), 613f6297, and db4c8fc7 (#7670, PR #7671) (PR #7674)
hannes-ucsc
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Commits on Jan 6, 2026

[r] Make dcp56 the default catalog on prod (#7658)
achave11-ucsc
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Commits on Jan 7, 2026