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@rushtong rushtong commented Jan 21, 2026

WIP

DO NOT MERGE

Addresses

https://broadworkbench.atlassian.net/browse/DT-2530

Summary

This is essentially a rewrite of https://github.com/broadinstitute/ontology-service as a callable service inside Consent. This PR allows for future work that queries on the index terms.

Adds the following features to Consent:

  • New table with DAO and Service plumbing to populate/store ontology index terms
  • Admin API to call the population process. This requires developer intervention to ensure that the files to be indexed exist in application-accessible GCS buckets.

Note that testing uses the latest (as of this PR) version of the DUOS ontology since it is fairly small and is representative of current usage. The DOID ontology is approximately 27 MB and less practical for testing.


Have you read CONTRIBUTING.md lately? If not, do that first.

  • Label PR with a Jira ticket number and include a link to the ticket
  • Label PR with a security risk modifier [no, low, medium, high]
  • PR describes scope of changes
  • Get a minimum of one thumbs worth of review, preferably two if enough team members are available
  • Get PO sign-off for all non-trivial UI or workflow changes
  • Verify all tests go green
  • Test this change deployed correctly and works on dev environment after deployment

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2 participants