Skip to content

Add dedicated terminal targets and workflow help#11

Open
iamh2o wants to merge 5 commits intocodex/add-rules-for-rsem-with-star-alignerfrom
codex/add-terminal-rules-for-rsem-pipeline
Open

Add dedicated terminal targets and workflow help#11
iamh2o wants to merge 5 commits intocodex/add-rules-for-rsem-with-star-alignerfrom
codex/add-terminal-rules-for-rsem-pipeline

Conversation

@iamh2o
Copy link

@iamh2o iamh2o commented Sep 18, 2025

Summary

  • rename the default terminal rule to produce_all and add help text for the workflow entrypoint
  • add produce_rsem_star and produce_rsem_bowtie2 terminal targets
  • centralize RSEM output expansion for reuse by the new targets

Testing

  • snakemake -n (fails: command not found)

https://chatgpt.com/codex/tasks/task_e_68cc88db724c83318674e3da7c1b7b76

AWS ParallelCluster user added 4 commits September 18, 2025 23:13
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant