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Add STAR support for RSEM quantification#9

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iamh2o wants to merge 6 commits intocodex/fix-ambiguous-rule-exception-in-rsemfrom
codex/add-rules-for-rsem-with-star-aligner
Open

Add STAR support for RSEM quantification#9
iamh2o wants to merge 6 commits intocodex/fix-ambiguous-rule-exception-in-rsemfrom
codex/add-rules-for-rsem-with-star-aligner

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@iamh2o
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@iamh2o iamh2o commented Sep 18, 2025

Summary

  • allow selecting the RSEM aligner via configuration
  • add a STAR-based rsem-calculate-expression workflow including wig generation
  • extend the config schema to validate the new aligner option

Testing

  • not run (not requested)

https://chatgpt.com/codex/tasks/task_e_68cbce8b60b0833180ee73e52b02a7c8

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