fixup: don't fail when trying to remove a file that no longer exists in more places

[cole-h]

Description

Closes #1402.

Checklist

• Formatted with cargo fmt
• Built with nix build
• Ran flake checks with nix flake check
• Added or updated relevant tests (leave unchecked if not applicable)
• Added or updated relevant documentation (leave unchecked if not applicable)
• Linked to related issues (leave unchecked if not applicable)

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