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Added 'clem.' to the start of entry point names for other CLEM workflows
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2 files changed

+10
-6
lines changed

2 files changed

+10
-6
lines changed

pyproject.toml

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -99,11 +99,11 @@ murfey = "murfey.client:run"
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"murfey_machine" = "murfey.util.config:get_extended_machine_config"
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[project.entry-points."murfey.workflows"]
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"clem.align_and_merge" = "murfey.workflows.clem.align_and_merge:submit_cluster_request"
102+
"clem.process_raw_lifs" = "murfey.workflows.clem.process_raw_lifs:zocalo_cluster_request"
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"clem.process_raw_tiffs" = "murfey.workflows.clem.process_raw_tiffs:zocalo_cluster_request"
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"clem.register_align_and_merge_result" = "murfey.workflows.clem.register_align_and_merge_results:register_align_and_merge_result"
103-
"process_raw_lifs" = "murfey.workflows.clem.process_raw_lifs:zocalo_cluster_request"
104-
"process_raw_tiffs" = "murfey.workflows.clem.process_raw_tiffs:zocalo_cluster_request"
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"register_lif_preprocessing_result" = "murfey.workflows.clem.register_preprocessing_results:register_lif_preprocessing_result"
106-
"register_tiff_preprocessing_result" = "murfey.workflows.clem.register_preprocessing_results:register_tiff_preprocessing_result"
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"clem.register_lif_preprocessing_result" = "murfey.workflows.clem.register_preprocessing_results:register_lif_preprocessing_result"
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"clem.register_tiff_preprocessing_result" = "murfey.workflows.clem.register_preprocessing_results:register_tiff_preprocessing_result"
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[tool.setuptools]
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package-dir = {"" = "src"}

src/murfey/server/api/clem.py

Lines changed: 6 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -629,7 +629,9 @@ def process_raw_lifs(
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try:
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# Try and load relevant Murfey workflow
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workflow: EntryPoint = list(
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entry_points().select(group="murfey.workflows", name="process_raw_lifs")
632+
entry_points().select(
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group="murfey.workflows", name="clem.process_raw_lifs"
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)
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)[0]
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except IndexError:
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raise RuntimeError("The relevant Murfey workflow was not found")
@@ -661,7 +663,9 @@ def process_raw_tiffs(
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try:
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# Try and load relevant Murfey workflow
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workflow: EntryPoint = list(
664-
entry_points().select(group="murfey.workflows", name="process_raw_tiffs")
666+
entry_points().select(
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group="murfey.workflows", name="clem.process_raw_tiffs"
668+
)
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)[0]
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except IndexError:
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raise RuntimeError("The relevant Murfey workflow was not found")

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