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Added comments about planned future work to CLEM tables
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src/murfey/util/db.py

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@@ -269,6 +269,10 @@ class CLEMImageSeries(SQLModel, table=True): # type: ignore
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) # One to many
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# Process checklist for series
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# FIXME: Columns need to be updated now that workflow is clearer
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# - Image alignment to happen in two stages:
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# 1. Align to self, then
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# 2. Align to a reference stack
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number_of_members: int = (
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0 # Expected number of image stacks belonging to this series
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)
@@ -323,6 +327,11 @@ class CLEMImageStack(SQLModel, table=True): # type: ignore
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)
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# Process checklist for each image
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# FIXME: Columns need to be updated now that workflow is clearer
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# - Image registration to happen in two stages:
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# 1. Align to itself, then
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# 2. Align to a reference image
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# - Individual RGB images don't need to be created; columns can be removed
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stack_created: bool = False # Verify that the stack has been created
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image_aligned: bool = False # Verify that image alignment has been done on stack
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aligned_image: Optional[str] = None # Full path to aligned image stack

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