Releases: EBI-G2P/gene2phenotype_api
Releases · EBI-G2P/gene2phenotype_api
Release v15.0.0
What's Changed
- Return the record summary by @dglemos in #352
- Bump setuptools from 80.10.2 to 82.0.0 by @dependabot[bot] in #348
- Bump asgiref from 3.11.0 to 3.11.1 by @dependabot[bot] in #349
- Support NMD escape and triggering by @dglemos in #351
- Add option to curation endpoint to list unclaimed drafts by @dglemos in #353
- Check permission before claiming draft curation by @dglemos in #355
- Bump django from 5.2.11 to 5.2.12 by @dependabot[bot] in #357
- Fix bug when updating curation draft by @dglemos in #358
- Remove record summary from response by @dglemos in #359
- Delete GenCCSubmission model and associated code by @dglemos in #360
- Update load_mined_publications.py - fix encoding and add more options by @dglemos in #356
- Fix bug when loading only DD mined publications by @dglemos in #361
Full Changelog: v14.0.0...v15.0.0
Release v14.0.0
What's Changed
- Validate curation draft before update by @dglemos in #330
- Bump wheel from 0.45.1 to 0.46.2 by @dependabot[bot] in #329
- G2P-693 - Create endpoint to claim draft record by @seeta-ramaraju in #331
- Bump wheel from 0.46.2 to 0.46.3 by @dependabot[bot] in #335
- Bump setuptools from 80.9.0 to 80.10.2 by @dependabot[bot] in #332
- Bump jsonschema from 4.25.1 to 4.26.0 by @dependabot[bot] in #334
- Fix merge records endpoint - update status of mined publications correctly by @dglemos in #336
- Bump django from 5.2.9 to 5.2.11 by @dependabot[bot] in #337
- Update endpoint merge_records to accept add_disease_synonym by @dglemos in #338
- Fix bug in VerifyEmailSerializer by @dglemos in #339
- Update github tests to support more versions of python by @dglemos in #340
- Add more tests related to authentication by @dglemos in #341
- Github action - test coverage by @dglemos in #342
- Update merge_records - allow records with different genotypes to be merged by @dglemos in #343
- Allow editing the publications number of families and individuals by @dglemos in #344
- Update search - add option to filter by genotype by @dglemos in #345
- Update curation list to return more information by @dglemos in #346
Full Changelog: v13.0.0...v14.0.0
Release v13.0.0
What's Changed
- Bump django from 5.1.14 to 5.1.15 by @dependabot[bot] in #308
- Add scores mined publication by @dglemos in #305
- Update GenCC submission endpoints by @dglemos in #307
- Improve regex to validate disease names by @dglemos in #309
- Return the year of mined publications by @dglemos in #310
- Bump django-simple-history from 3.10.1 to 3.11.0 by @dependabot[bot] in #313
- Bump urllib3 from 2.5.0 to 2.6.2 by @dependabot[bot] in #315
- Bump sqlparse from 0.5.4 to 0.5.5 by @dependabot[bot] in #311
- Bump drf-spectacular from 0.28.0 to 0.29.0 by @dependabot[bot] in #314
- Upgrade Django to 5.2 by @dglemos in #316
- Bump django from 5.2.7 to 5.2.9 by @dependabot[bot] in #318
- Bump urllib3 from 2.6.2 to 2.6.3 by @dependabot[bot] in #320
- Add filters to search - mechanism and variant consequence by @dglemos in #319
- Improve error messages and add tests by @dglemos in #317
- Update endpoint to delete lgd_phenotype_summary by @dglemos in #321
- Update model to support curation status by @dglemos in #322
- Revert changes to the endpoint to update curation draft by @dglemos in #324
- Update login error message by @dglemos in #323
- Fix bug in phenotype summary by @dglemos in #325
- Fix datacheck mined publications by @dglemos in #327
- G2P-665, 666 - Update endpoints to fetch saved draft, list saved drafts and search saved drafts by @seeta-ramaraju in #326
- Update model to accept missing scores for mined publications by @dglemos in #328
Full Changelog: v12.0.0...v13.0.0
Release v12.0.0
What's Changed
- Bump asgiref from 3.10.0 to 3.11.0 by @dependabot[bot] in #304
- Bump sqlparse from 0.5.3 to 0.5.4 by @dependabot[bot] in #300
- Bump rpds-py from 0.27.1 to 0.30.0 by @dependabot[bot] in #301
- Bump certifi from 2025.8.3 to 2025.11.12 by @dependabot[bot] in #303
- Check gene symbol before adding or updating draft record by @dglemos in #306
Full Changelog: v11.0.0...v12.0.0
Release v11.0.0
What's Changed
- Improve lgd delete endpoint by @dglemos in #285
- Improve endpoint to update disease names by @dglemos in #286
- Update disease cross references endpoint by @dglemos in #287
- Bump idna from 3.10 to 3.11 by @dependabot[bot] in #288
- Bump asgiref from 3.9.2 to 3.10.0 by @dependabot[bot] in #291
- Bump charset-normalizer from 3.4.3 to 3.4.4 by @dependabot[bot] in #290
- Bump referencing from 0.36.2 to 0.37.0 by @dependabot[bot] in #289
- Bump django from 5.1.13 to 5.1.14 by @dependabot[bot] in #294
- Remove outdated data check by @dglemos in #295
- Add restriction to endpoint publish by @dglemos in #293
- Fix bug in gene, disease and panel summary by @dglemos in #296
- Sort the mined_publications by most recent by @dglemos in #298
- Add migration to create user group for junior curators by @dglemos in #297
- Update script to import mined publications by @dglemos in #299
Full Changelog: v10.1.0...v11.0.0
v10.1.0
Release v10.0.0
What's Changed
- Improve endpoints to update diseases by @dglemos in #262
- Update endpoint activity_logs by @dglemos in #263
- Endpoint update disease to support synonyms by @dglemos in #264
- Bump djangorestframework from 3.16.0 to 3.16.1 by @dependabot[bot] in #269
- Bump jsonschema-specifications from 2025.4.1 to 2025.9.1 by @dependabot[bot] in #268
- Bump requests from 2.32.4 to 2.32.5 by @dependabot[bot] in #265
- Bump asgiref from 3.9.1 to 3.9.2 by @dependabot[bot] in #266
- Bump deepdiff from 8.6.0 to 8.6.1 by @dependabot[bot] in #267
- Upgrade django version to 5.1.12 by @dglemos in #271
- Add command to load disease ontologies by @dglemos in #270
- Update model to make locus name unique by @dglemos in #273
- Small updates to diseases by @dglemos in #272
- Add restrictions to endpoint to update diseases by @dglemos in #274
- Add datachecks: similar records by @dglemos in #275
- Upgrade Django version in requirements by @dglemos in #276
- Update version in test.yml by @dglemos in #277
- Check if disease name is valid before creating the disease by @dglemos in #278
- Add mined publications to download file by @dglemos in #279
- Add option to data checks command by @dglemos in #281
- G2P-591 - Rename text related to fetching gene stats data by @seeta-ramaraju in #280
- Fix publication data when publishing record by @dglemos in #283
- Fix command to load mined publications + update model by @dglemos in #282
- Update LGD endpoint to return disease id by @dglemos in #284
Full Changelog: v9.0.0...v10.0.0
Release v9.0.0
What's Changed
- G2P-485 - Unit tests for add & delete panel endpoints and improve delete panel endpoint by @seeta-ramaraju in #237
- Improve delete endpoints and add tests by @dglemos in #239
- Add more unit tests and other small improvements by @dglemos in #240
- Update login response and add tests by @dglemos in #241
- Improve user authentication settings by @dglemos in #238
- Improve unit tests method names by @seeta-ramaraju in #243
- Update user profile response by @dglemos in #244
- Return message for deleted records by @dglemos in #247
- Bump jsonschema from 4.25.0 to 4.25.1 by @dependabot[bot] in #248
- Bump deepdiff from 8.5.0 to 8.6.0 by @dependabot[bot] in #249
- Bump rpds-py from 0.26.0 to 0.27.1 by @dependabot[bot] in #251
- Bump charset-normalizer from 3.4.2 to 3.4.3 by @dependabot[bot] in #250
- G2P-597 - Update models.py - Add tables for storing mined publications by @seeta-ramaraju in #245
- Bump certifi from 2025.7.14 to 2025.8.3 by @dependabot[bot] in #252
- Add management command to load mined publications by @dglemos in #246
- G2P-550 - Include mined publications in lgd endpoint response by @seeta-ramaraju in #253
- G2P-550 - When adding publications, update status of linked mined publications by @seeta-ramaraju in #254
- Code improvements and update README by @seeta-ramaraju in #255
- G2P-484 - Add unit tests for update record mechanism endpoint by @seeta-ramaraju in #257
- Add mechanism terminology endpoint to public docs by @dglemos in #258
- Add data checks for mined publications by @dglemos in #256
- Endpoint to return the record activity log by @dglemos in #184
- Update actitivity endpoint to return the genotype by @dglemos in #259
- Add endpoint to update mined publications of LGD record by @seeta-ramaraju in #260
- Update endpoint lgd_disease_updates by @dglemos in #261
Full Changelog: v8.0.0...v9.0.0
Release v8.0.1
What's Changed
Full Changelog: v8.0.0...v8.0.1
Release v8.0.0
What's Changed
- Improve endpoint to delete LGD comments by @dglemos in #225
- Add more phenotype tests by @dglemos in #226
- Bump djangorestframework-simplejwt from 5.5.0 to 5.5.1 by @dependabot[bot] in #229
- Bump asgiref from 3.9.0 to 3.9.1 by @dependabot[bot] in #230
- Bump jsonschema from 4.24.0 to 4.25.0 by @dependabot[bot] in #228
- Bump certifi from 2025.6.15 to 2025.7.14 by @dependabot[bot] in #227
- Update model PublicationComment - link the comment to the LGD-publication by @dglemos in #231
- Update lgd endpoint to return the lgd-comment primary key by @dglemos in #233
- Update lgd and search endpoints to return merged records by @dglemos in #232
- G2P-481 - Add unit tests for delete curation endpoint by @seeta-ramaraju in #234
- G2P 479 - Add unit tests for update curation endpoint by @seeta-ramaraju in #235
- Update public documentation - move the record publications comments by @dglemos in #236
Full Changelog: v7.0.0...v8.0.0