Allow generic definition of reference databases in config file#74

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timrozday-mgnify wants to merge 65 commits intomainfrom

Commits on Nov 12, 2025

Handle modified ssu database with asv calling
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Bugfix (ssu was accidenlty changed to pr2)
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Add BBMAP standardise step at beginning to handle strange headers
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Remove database meta from channel
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Add reads meta to channels
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Change lists to tuples in channels to aid combine operator
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Nest the tuples in channels to aid combine operator
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Fix order of database files in channels
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Change channels containing database information so that the reads/seqs and databases don't get muddled. Change modules so that reads/seqs and database files are combined in a single channel. Small …
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Fix modules.config error
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Fix order of database files in channel
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Commits on Jan 27, 2026

Merge pull request #72 from EBI-Metagenomics/main
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Commits on Jan 29, 2026

Commits on Feb 16, 2026

Commits on Feb 17, 2026

Commits on Feb 18, 2026

Simplify sanity checker python script
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