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EBI-Metagenomics / nf-modules Public

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Feature/pathofact2 subwf#141

Merged

Ales-ibt merged 10 commits intomainEBI-Metagenomics/nf-modules:mainfrom

feature/pathofact2_subwfEBI-Metagenomics/nf-modules:feature/pathofact2_subwfCopy head branch name to clipboard

Feb 5, 2026

Conversation Commits10 (10)Checks Files changed

Merged

Feature/pathofact2 subwf#141
Ales-ibt merged 10 commits intomainfrom
feature/pathofact2_subwf

Commits

Commits on Feb 3, 2026

Fix subworkflow tests and pre-commit
Ales-ibt
committed
Debugging when no ips file
Ales-ibt
committed

Commits on Feb 4, 2026

Update subworkflows/ebi-metagenomics/pathofact2/main.nf

Ales-ibt
and
vagkaratzas
authored
Update subworkflows/ebi-metagenomics/pathofact2/main.nf

Ales-ibt
and
vagkaratzas
authored
Update subworkflows/ebi-metagenomics/pathofact2/tests/main.nf.test

Ales-ibt
and
vagkaratzas
authored
Update subworkflows/ebi-metagenomics/pathofact2/tests/main.nf.test

Ales-ibt
and
vagkaratzas
authored
Adding negative test
Ales-ibt
committed
Move hardcoded values to params and improve empty outputs handling
Ales-ibt
committed

Commits on Feb 5, 2026

Update subworkflows/ebi-metagenomics/pathofact2/meta.yml

Ales-ibt
and
mberacochea
authored
Update subworkflows/ebi-metagenomics/pathofact2/main.nf

Ales-ibt
and
mberacochea
authored

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