add parse hook that replaces Mesa dependency on LLVM by LLVM-minimal

[bedroge]

Should solve EESSI/software-layer#1203 (comment).

[bedroge]

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.10/pr_103/14102438

date	job status	comment
Oct 07 12:39:17 UTC 2025	submitted	job id 14102438 awaits release by job manager
Oct 07 12:39:50 UTC 2025	released	job awaits launch by Slurm scheduler
Oct 07 12:40:54 UTC 2025	running	job 14102438 is running
Oct 07 13:07:38 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-14102438.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ❌ no message matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2025.06-software-linux-aarch64-nvidia-grace-17598421860.tar.gz size: 12 MiB (12957189 bytes) entries: 1173 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all Bison/3.8.2-GCCcore-13.3.0.lua Doxygen/1.11.0-GCCcore-13.3.0.lua libiconv/1.17-GCCcore-13.3.0.lua libunwind/1.8.1-GCCcore-13.3.0.lua lit/18.1.8-GCCcore-13.3.0.lua Mako/1.3.5-GCCcore-13.3.0.lua Wayland/1.23.0-GCCcore-13.3.0.lua software under 2025.06/software/linux/aarch64/nvidia/grace/software Bison/3.8.2-GCCcore-13.3.0 Doxygen/1.11.0-GCCcore-13.3.0 libiconv/1.17-GCCcore-13.3.0 libunwind/1.8.1-GCCcore-13.3.0 lit/18.1.8-GCCcore-13.3.0 Mako/1.3.5-GCCcore-13.3.0 Wayland/1.23.0-GCCcore-13.3.0 reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod Bison/3.8.2-GCCcore-13.3.0/20251007_124358UTC Doxygen/1.11.0-GCCcore-13.3.0/ Doxygen/1.11.0-GCCcore-13.3.0/20251007_124733UTC libiconv/1.17-GCCcore-13.3.0/ libiconv/1.17-GCCcore-13.3.0/20251007_124554UTC libunwind/1.8.1-GCCcore-13.3.0/ libunwind/1.8.1-GCCcore-13.3.0/20251007_124519UTC lit/18.1.8-GCCcore-13.3.0/ lit/18.1.8-GCCcore-13.3.0/20251007_124827UTC Mako/1.3.5-GCCcore-13.3.0/ Mako/1.3.5-GCCcore-13.3.0/20251007_124444UTC Wayland/1.23.0-GCCcore-13.3.0/ Wayland/1.23.0-GCCcore-13.3.0/20251007_124815UTC other under 2025.06/software/linux/aarch64/nvidia/grace 2025.06/init/easybuild/eb_hooks.py
Oct 07 13:07:38 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-14102438.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[bedroge]

The hook seems to work, but the build of LLVM 18.1.8-minimal failed:

== 2025-10-07 15:01:02,960 run.py:457 INFO run_shell_cmd: command environment of "/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/bin/clang -o test123.o -c test123.c" will be saved to /tmp/eb-ntnfi58w/eb-t04uwesz/run-shell-cmd-output/clang-jk_zr317
== 2025-10-07 15:01:02,960 run.py:460 INFO run_shell_cmd: Output of "/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/bin/clang -o test123.o -c test123.c" will be logged to /tmp/eb-ntnfi58w/eb-t04uwesz/run-shell-cmd-output/clang-jk_zr317/out.txt
== 2025-10-07 15:01:02,988 run.py:494 INFO Path to bash that will be used to run shell commands: /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/bin/bash
== 2025-10-07 15:01:02,988 run.py:508 INFO Running shell command '/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/bin/clang -o test123.o -c test123.c' in /tmp/eessibot/easybuild/build/LLVM/18.1.8/GCCcore-13.3.0-minimal/llvm.obj.1
== 2025-10-07 15:01:03,009 run.py:626 WARNING Shell command FAILED (exit code 127): /cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/bin/clang -o test123.o -c test123.c
== 2025-10-07 15:01:03,009 run.py:627 INFO Output of '/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/bin/clang ...' shell command (stdout + stderr):
/cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/bin/bash: line 1: /cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/bin/clang: No such file or directory

Looks like an issue with the sysroot-specific sanity check here: https://github.com/easybuilders/easybuild-easyblocks/blob/develop/easybuild/easyblocks/l/llvm.py#L1497.

[bedroge]

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.10/pr_103/14102690

date	job status	comment
Oct 07 14:42:14 UTC 2025	submitted	job id 14102690 awaits release by job manager
Oct 07 14:42:55 UTC 2025	released	job awaits launch by Slurm scheduler
Oct 07 14:43:59 UTC 2025	running	job 14102690 is running
Oct 07 15:27:12 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-14102690.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2025.06-software-linux-aarch64-nvidia-grace-17598506460.tar.gz size: 264 MiB (277073917 bytes) entries: 10173 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all Bison/3.8.2-GCCcore-13.3.0.lua Brotli/1.1.0-GCCcore-13.3.0.lua Doxygen/1.11.0-GCCcore-13.3.0.lua fontconfig/2.15.0-GCCcore-13.3.0.lua freetype/2.13.2-GCCcore-13.3.0.lua libdrm/2.4.122-GCCcore-13.3.0.lua libglvnd/1.7.0-GCCcore-13.3.0.lua libiconv/1.17-GCCcore-13.3.0.lua libpng/1.6.43-GCCcore-13.3.0.lua libunwind/1.8.1-GCCcore-13.3.0.lua lit/18.1.8-GCCcore-13.3.0.lua LLVM/18.1.8-GCCcore-13.3.0-minimal.lua Mako/1.3.5-GCCcore-13.3.0.lua Mesa/24.1.3-GCCcore-13.3.0.lua Wayland/1.23.0-GCCcore-13.3.0.lua X11/20240607-GCCcore-13.3.0.lua software under 2025.06/software/linux/aarch64/nvidia/grace/software Bison/3.8.2-GCCcore-13.3.0 Brotli/1.1.0-GCCcore-13.3.0 Doxygen/1.11.0-GCCcore-13.3.0 fontconfig/2.15.0-GCCcore-13.3.0 freetype/2.13.2-GCCcore-13.3.0 libdrm/2.4.122-GCCcore-13.3.0 libglvnd/1.7.0-GCCcore-13.3.0 libiconv/1.17-GCCcore-13.3.0 libpng/1.6.43-GCCcore-13.3.0 libunwind/1.8.1-GCCcore-13.3.0 lit/18.1.8-GCCcore-13.3.0 LLVM/18.1.8-GCCcore-13.3.0-minimal Mako/1.3.5-GCCcore-13.3.0 Mesa/24.1.3-GCCcore-13.3.0 Wayland/1.23.0-GCCcore-13.3.0 X11/20240607-GCCcore-13.3.0 reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod Bison/3.8.2-GCCcore-13.3.0/20251007_145927UTC Brotli/1.1.0-GCCcore-13.3.0/ Brotli/1.1.0-GCCcore-13.3.0/20251007_150324UTC Doxygen/1.11.0-GCCcore-13.3.0/ Doxygen/1.11.0-GCCcore-13.3.0/20251007_150250UTC fontconfig/2.15.0-GCCcore-13.3.0/ fontconfig/2.15.0-GCCcore-13.3.0/20251007_150420UTC freetype/2.13.2-GCCcore-13.3.0/ freetype/2.13.2-GCCcore-13.3.0/20251007_150339UTC libdrm/2.4.122-GCCcore-13.3.0/ libdrm/2.4.122-GCCcore-13.3.0/20251007_152050UTC libglvnd/1.7.0-GCCcore-13.3.0/ libglvnd/1.7.0-GCCcore-13.3.0/20251007_152100UTC libiconv/1.17-GCCcore-13.3.0/ libiconv/1.17-GCCcore-13.3.0/20251007_150119UTC libpng/1.6.43-GCCcore-13.3.0/ libpng/1.6.43-GCCcore-13.3.0/20251007_150302UTC libunwind/1.8.1-GCCcore-13.3.0/ libunwind/1.8.1-GCCcore-13.3.0/20251007_150012UTC lit/18.1.8-GCCcore-13.3.0/ lit/18.1.8-GCCcore-13.3.0/20251007_144414UTC LLVM/18.1.8-GCCcore-13.3.0-minimal/ LLVM/18.1.8-GCCcore-13.3.0-minimal/20251007_145823UTC Mako/1.3.5-GCCcore-13.3.0/ Mako/1.3.5-GCCcore-13.3.0/20251007_145939UTC Mesa/24.1.3-GCCcore-13.3.0/ Mesa/24.1.3-GCCcore-13.3.0/20251007_152258UTC Wayland/1.23.0-GCCcore-13.3.0/ Wayland/1.23.0-GCCcore-13.3.0/20251007_150045UTC X11/20240607-GCCcore-13.3.0/ X11/20240607-GCCcore-13.3.0/20251007_152036UTC other under 2025.06/software/linux/aarch64/nvidia/grace 2025.06/init/easybuild/eb_hooks.py
Oct 07 15:27:12 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-14102690.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[bedroge]

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2023.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.10/pr_103/14102891

date	job status	comment
Oct 07 17:32:24 UTC 2025	submitted	job id 14102891 awaits release by job manager
Oct 07 17:32:36 UTC 2025	released	job awaits launch by Slurm scheduler
Oct 07 17:33:39 UTC 2025	running	job 14102891 is running
Oct 07 17:43:01 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-14102891.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-aarch64-nvidia-grace-17598584790.tar.gz size: 0 MiB (21537 bytes) entries: 1 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/nvidia/grace/software no software packages in tarball reprod directories under 2023.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/nvidia/grace 2023.06/init/easybuild/eb_hooks.py
Oct 07 17:43:01 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/28) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/28) EESSI_LAMMPS_lj %device_type=gpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /1f2ca7c1 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 7168.26 timesteps/s (r:0, l:None, u:None) [ OK ] (10/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1508.534 timesteps/s (r:0, l:None, u:None) [ OK ] (11/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1515.613 timesteps/s (r:0, l:None, u:None) [ OK ] (12/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /b22a48f5 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1523.405 timesteps/s (r:0, l:None, u:None) [ OK ] (13/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.89 us (r:0, l:None, u:None) [ OK ] (14/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.78 us (r:0, l:None, u:None) [ OK ] (15/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.89 us (r:0, l:None, u:None) [ OK ] (16/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.07 us (r:0, l:None, u:None) [ OK ] (17/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.47 us (r:0, l:None, u:None) [ OK ] (18/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.91 us (r:0, l:None, u:None) [ OK ] (19/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.48 us (r:0, l:None, u:None) [ OK ] (20/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.43 us (r:0, l:None, u:None) [ OK ] (21/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (22/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.48 us (r:0, l:None, u:None) [ OK ] (23/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (24/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.51 us (r:0, l:None, u:None) [ OK ] (25/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42058.81 MB/s (r:0, l:None, u:None) [ OK ] (26/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 41537.44 MB/s (r:0, l:None, u:None) [ OK ] (27/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42505.78 MB/s (r:0, l:None, u:None) [ OK ] (28/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42282.81 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 20/28 test case(s) from 28 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file slurm-14102891.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 07 17:49:42 UTC 2025	uploaded	transfer of eessi-2023.06-software-linux-aarch64-nvidia-grace-17598584790.tar.gz to S3 bucket succeeded

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.10/pr_103/14102892

date	job status	comment
Oct 07 17:32:28 UTC 2025	submitted	job id 14102892 awaits release by job manager
Oct 07 17:32:32 UTC 2025	released	job awaits launch by Slurm scheduler
Oct 07 17:33:42 UTC 2025	running	job 14102892 is running
Oct 07 17:34:46 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-14102892.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2025.06-software-linux-aarch64-nvidia-grace-17598583980.tar.gz size: 0 MiB (21541 bytes) entries: 1 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all no module files in tarball software under 2025.06/software/linux/aarch64/nvidia/grace/software no software packages in tarball reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2025.06/software/linux/aarch64/nvidia/grace 2025.06/init/easybuild/eb_hooks.py
Oct 07 17:34:46 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-14102892.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 07 17:49:33 UTC 2025	uploaded	transfer of eessi-2025.06-software-linux-aarch64-nvidia-grace-17598583980.tar.gz to S3 bucket succeeded

[trz42]

lgtm

[trz42]

Updated eb_hooks.py files have become available via CernVM-FS.