Skip to content

fix seeksoul Dockerfile #1

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
helinteg wants to merge 1 commit into
base: dev
Choose a base branch
from
Open

fix seeksoul Dockerfile #1

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
32 changes: 30 additions & 2 deletions seeksoultools/1.2.0/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
# Base Image
FROM continuumio/miniconda3:4.6.14
FROM continuumio/miniconda3:4.8.2

# Metadata
LABEL software="seeksoultools" \
Expand All @@ -20,11 +20,39 @@ LABEL maintainer="Evgeny Karpulevich <karpulevich@gmail.com>"

SHELL ["/bin/bash", "-c"]

# Install procps and clean apt cache
RUN apt-get update --allow-releaseinfo-change \
&& apt-get install -y \
cpio \
procps \
rpm2cpio \
unzip \
&& apt-get clean -y && rm -rf /var/lib/apt/lists/*

RUN mkdir seeksoultools.1.2.0 && cd seeksoultools.1.2.0 && wget -c -O seeksoultools.1.2.0.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/seeksoultools/seeksoultools.1.2.0.tar.gz" && tar zxf seeksoultools.1.2.0.tar.gz; . /seeksoultools.1.2.0/bin/activate && /seeksoultools.1.2.0/bin/conda-unpack && apt-get clean && apt-get purge && rm -rf /var/lib/apt/lists/* /tmp/* seeksoultools.1.2.0.tar.gz

#
# Add biodocker user with password biodocker
#
RUN useradd --create-home --shell /bin/bash --user-group --uid 1000 --groups sudo biodocker && \
echo `echo "biodocker\nbiodocker\n" | passwd biodocker`

#
# Change user
#
USER biodocker

#
# Create $HOME/bin folder
#
RUN mkdir -p /home/biodocker/bin

#
# Add $HOME/bin to path
#
ENV PATH=$PATH:/home/biodocker/bin
ENV HOME=/home/biodocker

ENV PATH /seeksoultools.1.2.0/bin:$PATH

WORKDIR /data/