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@leepc12 leepc12 released this 14 Nov 18:09
· 62 commits to master since this release
v2.1.0
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Hotfix for chip.subsample_reads bug.

This bug was introduced in v1.2.2 (6/13/2019).
chip.ctl_subsample_reads is ignored and chip.subsample_reads (0: disabled by default) is used for subsampling both experiment replicates and controls.

Outputs are affected by this bug if chip.subsample_reads is non-zero and chip.pipeline_type is tf (default) or histone.
Since chip.subsample_reads is 0 (disabled) by default, outputs are not affected if you used a default set of parameters.

The following outputs can be affected by this bug:

  • Control TAG-ALIGNs and all its downstream analyses.
  • Such downstream outputs include all kinds of peaks (spp, macs2, idr, overlap).
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