Validation based on hdf tree traversal#333

Merged

lukaspie merged 84 commits intomasterfrom

hdf-based-validation

Aug 21, 2025

Commits on Aug 14, 2025

First ideas of validation based on hdf tree traversal

domna
authored and
lukaspie
committed
Improved get_children_names function

domna
authored and
lukaspie
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Read extends keyword from file

domna
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lukaspie
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Insert extends parents into the inheritance chain

domna
authored and
lukaspie
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Automatically populate tree from appdef parents

domna
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lukaspie
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Only populate tree if parents are present

domna
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lukaspie
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Docstring improvements

domna
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lukaspie
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If minOccurs == 0, set the group to optional

domna
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lukaspie
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Add extended NXtest

domna
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lukaspie
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Fix function name

domna
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lukaspie
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Do actual field checks

domna
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lukaspie
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Add cli and units support

domna
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lukaspie
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Include units files in package

domna
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lukaspie
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Add working validation

domna
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lukaspie
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Use node_type in find_node_for

domna
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lukaspie
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Fix tests

domna
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lukaspie
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Fixes from merging

domna
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lukaspie
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Import ureg for units validation

domna
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lukaspie
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Adding some test files for hdf5_validator.

RubelMozumder
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lukaspie
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pytest for hdf5 validation.

RubelMozumder
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lukaspie
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test for nexus file validation.

RubelMozumder
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lukaspie
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VisitingCode-1

RubelMozumder
authored and
lukaspie
committed
fix rebase issues
lukaspie
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clean up namefitting
lukaspie
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add ignore-undocumented flag for verify_nexus
lukaspie
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implement special checks for NXcollection
lukaspie
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implement check for reserved prefixes
lukaspie
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implement check for reserved suffixes
lukaspie
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haandle 'object' dtype separately (for lists from HDF5 files)
lukaspie
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proper handling of NXdata groups
lukaspie
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handle lists and enumerated lists
lukaspie
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separate function from cli tool to use in test framework
lukaspie
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fix selection of nxdl roots
lukaspie
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remove unneeded NXDL test files
lukaspie
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start fixing tests
lukaspie
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check for required groups
lukaspie
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fix test for reserved prefixes
lukaspie
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adjust error messages, check for documented in variadic concepts, check for name conflicts, ignore NXcollection
lukaspie
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clear collector between runs
lukaspie
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use the same error message for missing concepts
lukaspie
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further fixes for finding undocumented terms
lukaspie
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fixes for checking documented concepts
lukaspie
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rename functionality to 'validate'
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check target attribute
lukaspie
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follow links, check target attribute
lukaspie
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validate link targets
lukaspie
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use custom visititems for link checking
lukaspie
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fix required children checking
lukaspie
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use correct function in test framework
lukaspie
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add docstrings
lukaspie
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remove unneeded changes
lukaspie
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mypy fixes
lukaspie
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use hints for NXdata fields, log only once
lukaspie
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use caplog_level for validation in testing framework
lukaspie
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add test for compressed payload from template
lukaspie
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unpack compressed tuples
lukaspie
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check enums that are lists
lukaspie
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check for target attribute in template link
lukaspie
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rename function argument
lukaspie
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update docs
lukaspie
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remove test_nxdl path in dev_tools
lukaspie
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make clean_str_attr function more robust
lukaspie
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return non-strings as-is
lukaspie
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New rules around `@target` attribute
lukaspie
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fix a couple more test cases
lukaspie
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Apply suggestions from code review

lukaspie
and
RubelMozumder
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replace custom func with a function from dev_tools
lukaspie
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define level map at object level
lukaspie
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refactor docs
lukaspie
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ignore groups without NX_class attribute (and fields/attributes) within
lukaspie
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remove duplicate import
lukaspie
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mypy fixes
lukaspie
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simpliy one test case
lukaspie
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Commits on Aug 18, 2025

use a unified function for checking reserved suffixes
lukaspie
committed

Commits on Aug 19, 2025

clean up template if group/field was linked to field/group
lukaspie
committed

Commits on Aug 20, 2025