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FCP-INDI / C-PAC Public

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♻️ Refactor `niworkflow-ants` for skullstripping#1403

Closed

shnizzedy wants to merge 15 commits intodevelopFCP-INDI/C-PAC:developfrom

fix/niworkflows-antsFCP-INDI/C-PAC:fix/niworkflows-antsCopy head branch name to clipboard

Conversation Commits15 (15)Checks Files changed

Closed

♻️ Refactor `niworkflow-ants` for skullstripping#1403
shnizzedy wants to merge 15 commits intodevelopfrom
fix/niworkflows-ants

Commits

Commits on Nov 25, 2020

:recycle: Import and monkeypatch `niworkflows.anat.ants.init_brain_extraction_wf`

committed
:memo: Add flowchart and examples for niworkflows-ants
shnizzedy
committed
:recycle: Update workflow connections for refactored niworkflows-ants
shnizzedy
committed
:arrow_up: Add script to install specific version of ANTs

shnizzedy
and
cookpa
committed
:arrow_up: Upgrade ANTs to v2.3.4 (from 2.1.0)
shnizzedy
committed

Commits on Nov 30, 2020

:construction_worker: Use conda to install cython
shnizzedy
committed
:arrow_up: Upgrade prov @ 1.5.2 (from 1.5.0)
shnizzedy
committed
:arrow_up: Upgrade nibable @ 3.0.1 (from 2.3.3)
shnizzedy
committed

Commits on Dec 1, 2020

:bug: Pass memory managment paramters to niworkflows-ants skullstripping

shnizzedy
and
hahaai
committed
:hammer: Simplify ANTs build script
shnizzedy
committed
:hammer: Fix `CMAKE_INSTALL_PREFIX`
shnizzedy
committed

Commits on Dec 3, 2020

:alembic: Replace 'MultiProc' with 'LegacyMultiProc'
shnizzedy
committed
:construction_worker: Authenticate to GitHub Container Registry
shnizzedy
committed
:construction: Make ANTS registration verbose (for debugging)
shnizzedy
committed
:package: Build from base image that already includes ANTS 2.3.4
shnizzedy
committed

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