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23 changes: 23 additions & 0 deletions docs/_sources/developer/qc.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
Quality Control
===============

.. automodule:: CPAC.qc
:members:

.. automodule:: CPAC.qc.globals
:members:

.. automodule:: CPAC.qc.pipeline
:members:

.. automodule:: CPAC.qc.qc
:members:

.. automodule:: CPAC.qc.qcmetrics
:members:

.. automodule:: CPAC.qc.utils
:members:

.. include:: /developer/xcpqc

28 changes: 27 additions & 1 deletion docs/_sources/developer/workflows/registration.rst
Original file line number Diff line number Diff line change
Expand Up @@ -2,5 +2,31 @@ Registration
============

.. automodule:: CPAC.registration
:members:
:members:

.. automodule:: CPAC.registration.registration
:members:

Exceptions
^^^^^^^^^^

.. automodule:: CPAC.registration.exceptions
:members:

Guardrails
^^^^^^^^^^

.. automodule:: CPAC.registration.guardrails
:members:

Output_func_to_standard
^^^^^^^^^^^^^^^^^^^^^^^

.. automodule:: CPAC.registration.output_func_to_standard
:members:

Utils
^^^^^

.. automodule:: CPAC.registration.utils
:members:
2 changes: 1 addition & 1 deletion docs/_sources/developer/xcpqc.rst
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
eXtensible Connectivity Pipeline-style quality control files
============================================================
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. automodule:: CPAC.qc.xcp
:members:
Expand Down
13 changes: 7 additions & 6 deletions docs/_sources/exec.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,8 @@


class ExecDirective(Directive):
"""Execute the specified python code and insert the output into the document
"""
"""Execute the specified python code and insert the output into the
document"""
has_content = True

def run(self):
Expand All @@ -29,7 +29,10 @@ def run(self):

try:
exec('\n'.join(self.content))
return [nodes.literal_block(text=sys.stdout.getvalue())]
content = sys.stdout.getvalue()
if content.strip():
return [nodes.literal_block(text=content)]
return []
except Exception as e:
_, _, exc_tb = sys.exc_info()
fname = os.path.split(exc_tb.tb_frame.f_code.co_filename)[1]
Expand All @@ -39,9 +42,7 @@ def run(self):
)
)
stack_message = nodes.paragraph(text=str(e))
return [
nodes.error(None, error_message, stack_message)
]
return [nodes.error(None, error_message, stack_message)]
finally:
sys.stdout = oldStdout
os.chdir(oldCwd)
Expand Down
2 changes: 1 addition & 1 deletion docs/_sources/user/pipelines/quality.rst
Original file line number Diff line number Diff line change
Expand Up @@ -5,4 +5,4 @@ Quality Control
:maxdepth: 1

QC Pages - Visual Data Quality Control </user/qc_interface>
XCP QC files - eXtensible Connectivity Pipeline-style quality control files </user/xcpqc>
Developer Documentation: Quality Control </user/qc>