pl-N4BiasFieldCorrection is a ChRIS
ds plugin wrapper for the N4BiasFieldCorrection
program from ANTs.
pl-N4BiasFieldCorrection runs N4BiasFieldCorrection on every .nii and .nii.gz file found in a specified input directory.
pl-N4BiasFieldCorrection is a ChRIS plugin, meaning it can
run from either within ChRIS or the command-line.
To get started with local command-line usage, use Apptainer
(a.k.a. Singularity) to run pl-N4BiasFieldCorrection as a container:
apptainer exec docker://fnndsc/pl-N4BiasFieldCorrection n4wrapper input/ output/To print its available options, run:
apptainer exec docker://fnndsc/pl-N4BiasFieldCorrection n4wrapper --help