pl-subdiv-minc is a ChRIS
ds plugin which wraps mincresample.
It increases the resolution of binary mask images
using trilinear interpolation.
This is useful for fetal brain MRI where the voxel sizes
are very large relative to the shape of the mask.
See also: https://github.com/FNNDSC/ep-subdivide-mnc-methods
pl-subdiv-minc is a ChRIS plugin, meaning it can
run from either within ChRIS or the command-line.
To get started with local command-line usage, use Apptainer
(a.k.a. Singularity) to run pl-subdiv-minc as a container:
apptainer exec docker://fnndsc/pl-subdiv-minc subdiv_mask [--args values...] input/ output/To print its available options, run:
apptainer exec docker://fnndsc/pl-subdiv-minc subdiv_mask --helpSome example input MINC files can be found in the datalad repository here: https://github.com/FNNDSC/example_shapes/tree/master/minc
apptainer exec docker://fnndsc/pl-subdiv-minc:latest subdiv_mask incoming/ outgoing/Run chris_plugin_info
to produce a JSON description of this plugin, which can be uploaded to a ChRIS Store.
docker run --rm localhost/fnndsc/pl-subdiv-minc:dev chris_plugin_info > chris_plugin_info.json