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2 changes: 2 additions & 0 deletions README.md
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## RNA-seq

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### Processing

This pipeline is for paired end reads RNA-seq sequences. The final output is matrix called ``raw_counts_matrix.txt`` with counts for each sample, located in ``$projectDir/results/folder``. The pipeline is made to run on a specific cluster using a SGE based executor. Modify profile options in ``nextflow.config`` accordingly.
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