feat: refactor partitioners

inputFiles/compositionalMultiphaseFlow/benchmarks/SPE11/b/spe11b_vti_source_00840x00120.xml

@@ -1,22 +1,27 @@
-<?xml version="1.0" ?>
+<?xml version="1.0"?>
 
 <Problem>
 
   <Included>
     <File name="spe11b_vti_source_base.xml" />
   </Included>
+  <Partitioner>
+    <CellGraphPartitioner
+      name="partitioner"
+      engine="parmetis"
+      numRefinements="4" />
+  </Partitioner>
 
   <Mesh>
     <VTKMesh
       name="mesh"
       file="mesh/spe11b_00840x00120.vti"
       regionAttribute="faciesIndex"
-      partitionRefinement="5"
       logLevel="5">
     </VTKMesh>
   </Mesh>
 
-<!-- SPHINX_GEOM -->
+  <!-- SPHINX_GEOM -->
   <Geometry>
     <Box
       name="top"
@@ -26,14 +31,14 @@
       name="bottom"
       xMin="{   -0.01, -0.01, -0.01 }"
       xMax="{ 8400.01,  1.01, 10.01 }" />
-      <Box
-       name="thermalSource1"
-       xMin="{ 2699.99, -0.01, 299.99 }"
-       xMax="{ 2710.01,  1.01, 310.01 }" />
-      <Box
-       name="thermalSource2"
-       xMin="{ 5099.99, -0.01, 699.99 }"
-       xMax="{ 5110.01,  1.01, 710.01 }" />
+    <Box
+      name="thermalSource1"
+      xMin="{ 2699.99, -0.01, 299.99 }"
+      xMax="{ 2710.01,  1.01, 310.01 }" />
+    <Box
+      name="thermalSource2"
+      xMin="{ 5099.99, -0.01, 699.99 }"
+      xMax="{ 5110.01,  1.01, 710.01 }" />
   </Geometry>
   <!-- SPHINX_GEOM_END -->
 
@@ -49,7 +54,7 @@
   <!-- SPHINX_BUFFER_FN_END -->
 
 
-   <!-- SPHINX_EVENTS -->
+  <!-- SPHINX_EVENTS -->
   <Events
     minTime="-31536000000"
     maxTime="31536000000">
@@ -71,21 +76,21 @@
       beginTime="7.884e5"
       maxEventDt="1.3e6"
       target="/Solvers/compositionalMultiphaseFlow" />
-   <!-- SPHINX_EVENTS_END -->
+    <!-- SPHINX_EVENTS_END -->
 
     <PeriodicEvent
-          name="outputs1"
-          beginTime="0"
-          endTime="3153600000"
-          timeFrequency="315360000"
-          targetExactTimestep="1"
-          target="/Outputs/vtkOutput" />
+      name="outputs1"
+      beginTime="0"
+      endTime="3153600000"
+      timeFrequency="315360000"
+      targetExactTimestep="1"
+      target="/Outputs/vtkOutput" />
     <PeriodicEvent
-            name="outputs2"
-            beginTime="3153600000"
-            timeFrequency="3153600000"
-            targetExactTimestep="1"
-            target="/Outputs/vtkOutput" />
+      name="outputs2"
+      beginTime="3153600000"
+      timeFrequency="3153600000"
+      targetExactTimestep="1"
+      target="/Outputs/vtkOutput" />
   </Events>
-  
+
 </Problem>

inputFiles/compositionalMultiphaseWell/staircase_co2_wells_hybrid_3d.xml

@@ -62,7 +62,6 @@
       file="staircase3d_tet_with_properties.vtu"
       fieldsToImport="{ FluidComposition, PERM, PORO }"
       fieldNamesInGEOS="{ globalCompFraction, rockPerm_permeability, rockPorosity_referencePorosity }"
-      partitionRefinement="1"
       logLevel="2">
 
       <InternalWell

inputFiles/poromechanics/PoroElastic_hybridHexPrism_co2_base.xml

@@ -2,12 +2,15 @@
 
 <Problem>
 
+  <Partitioner>
+    <CellGraphPartitioner name="partitioner" engine="ptscotch" />
+  </Partitioner>
+
   <Mesh>
 
     <VTKMesh
       name="mesh"
       logLevel="5"
-      partitionMethod="ptscotch"
       scale="{ 50, 50, 50 }"
       fieldsToImport="{ PORO, NTG, DENSITY, BULKMOD }"
       fieldNamesInGEOS="{ rockPorosity_referencePorosity, netToGross, skeleton_density, skeleton_bulkModulus }"

inputFiles/singlePhaseFlow/incompressible_pebi3d.xml

@@ -1,4 +1,4 @@
-<?xml version="1.0" ?>
+<?xml version="1.0"?>
 
 <Problem>
   <Solvers
@@ -10,22 +10,28 @@
       targetRegions="{ Domain }">
       <NonlinearSolverParameters
         newtonTol="1.0e-6"
-        newtonMaxIter="8"/>
+        newtonMaxIter="8" />
       <LinearSolverParameters
-        directParallel="0"/>
+        directParallel="0" />
     </SinglePhaseFVM>
   </Solvers>
 
+  <Partitioner>
+    <CellGraphPartitioner
+      name="partitioner"
+      engine="parmetis"
+      numRefinements="2" />
+  </Partitioner>
+
+
   <Mesh>
     <VTKMesh
       name="mesh"
-      logLevel="5"	
-      partitionRefinement="3"
+      logLevel="5"
       useGlobalIds="1"
       fieldsToImport="{ PERM, PORO, NTG }"
       fieldNamesInGEOS="{ rockPerm_permeability, rockPorosity_referencePorosity, netToGross }"
-
-      file="pebi3d_with_properties.vtu"/>
+      file="pebi3d_with_properties.vtu" />
   </Mesh>
 
   <Geometry>
@@ -44,32 +50,32 @@
     <PeriodicEvent
       name="outputs"
       timeFrequency="1.0"
-      target="/Outputs/vtkOutput"/>
+      target="/Outputs/vtkOutput" />
 
     <PeriodicEvent
       name="solverApplications"
       forceDt="1.0"
-      target="/Solvers/SinglePhaseFlow"/>
+      target="/Solvers/SinglePhaseFlow" />
 
     <PeriodicEvent
       name="restarts"
       timeFrequency="1.0"
       targetExactTimestep="0"
-      target="/Outputs/restartOutput"/>
+      target="/Outputs/restartOutput" />
   </Events>
 
   <NumericalMethods>
     <FiniteVolume>
       <TwoPointFluxApproximation
-        name="singlePhaseTPFA"/>
+        name="singlePhaseTPFA" />
     </FiniteVolume>
   </NumericalMethods>
 
   <ElementRegions>
     <CellElementRegion
       name="Domain"
       cellBlocks="{ * }"
-      materialList="{ water, rock }"/>
+      materialList="{ water, rock }" />
   </ElementRegions>
 
   <Constitutive>
@@ -79,26 +85,26 @@
       defaultViscosity="0.001"
       referencePressure="0.0"
       compressibility="0.0"
-      viscosibility="0.0"/>
+      viscosibility="0.0" />
 
     <CompressibleSolidConstantPermeability
       name="rock"
       solidModelName="nullSolid"
       porosityModelName="rockPorosity"
-      permeabilityModelName="rockPerm"/>
+      permeabilityModelName="rockPerm" />
 
     <NullModel
-      name="nullSolid"/>
+      name="nullSolid" />
 
     <PressurePorosity
       name="rockPorosity"
       defaultReferencePorosity="0.05"
       referencePressure="0.0"
-      compressibility="0.0"/>
+      compressibility="0.0" />
 
     <ConstantPermeability
       name="rockPerm"
-      permeabilityComponents="{ 2.0e-16, 2.0e-16, 2.0e-16 }"/>
+      permeabilityComponents="{ 2.0e-16, 2.0e-16, 2.0e-16 }" />
   </Constitutive>
 
   <FieldSpecifications>
@@ -109,28 +115,28 @@
       setNames="{ all }"
       objectPath="ElementRegions/Domain"
       fieldName="pressure"
-      scale="0.0"/>
+      scale="0.0" />
 
-   <FieldSpecification
+    <FieldSpecification
       name="sourceTerm"
       objectPath="ElementRegions/Domain"
       fieldName="pressure"
       scale="5e6"
-      setNames="{ source }"/>
+      setNames="{ source }" />
 
-   <FieldSpecification
+    <FieldSpecification
       name="sinkTerm"
       objectPath="ElementRegions/Domain"
       fieldName="pressure"
       scale="-5e6"
-      setNames="{ sink }"/>
+      setNames="{ sink }" />
   </FieldSpecifications>
 
   <Outputs>
     <VTK
-      name="vtkOutput"/>
+      name="vtkOutput" />
 
     <Restart
-      name="restartOutput"/>
+      name="restartOutput" />
   </Outputs>
-</Problem>
+</Problem>

inputFiles/singlePhaseFlow/polyhedralDiscretizations/incompressible_consistency_base.xml

@@ -1,32 +1,35 @@
-<?xml version="1.0" ?>
+<?xml version="1.0"?>
 
 <Problem>
 
+  <Partitioner>
+    <CellGraphPartitioner name="partitioner" engine="noop" />
+  </Partitioner>
+
   <Mesh>
     <VTKMesh
       name="mesh"
-      logLevel="5"  
-      partitionRefinement="0"
+      logLevel="5"
       useGlobalIds="0"
-      file="polyhedral_voronoi_lattice.vtu"/>
+      file="polyhedral_voronoi_lattice.vtu" />
   </Mesh>
 
   <Geometry>
-      <Box
+    <Box
       name="westBC"
       xMin="{ -0.001, 0.0, 0.0}"
-      xMax="{ +0.001, 1.0, 1.0}"/>
-      <Box
+      xMax="{ +0.001, 1.0, 1.0}" />
+    <Box
       name="eastBC"
       xMin="{ +0.999, 0.0, 0.0}"
-      xMax="{ +1.001, 1.0, 1.0}"/>
+      xMax="{ +1.001, 1.0, 1.0}" />
   </Geometry>
 
   <ElementRegions>
     <CellElementRegion
       name="Domain"
       cellBlocks="{ * }"
-      materialList="{rock, fluid }"/>
+      materialList="{rock, fluid }" />
   </ElementRegions>
 
   <Solvers gravityVector="{ 0.0, 0.0, 0.0}"> </Solvers>
@@ -42,26 +45,26 @@
       referencePressure="0.0"
       compressibility="0.0"
       viscosibility="0.0"
-      densityModelType="linear"/>
+      densityModelType="linear" />
 
     <CompressibleSolidConstantPermeability
       name="rock"
       solidModelName="nullSolid"
       porosityModelName="rockPorosity"
-      permeabilityModelName="rockPerm"/>
+      permeabilityModelName="rockPerm" />
 
     <NullModel
-      name="nullSolid"/>
+      name="nullSolid" />
 
     <PressurePorosity
       name="rockPorosity"
       defaultReferencePorosity="0.1"
       referencePressure="0.0"
-      compressibility="0.0"/>
+      compressibility="0.0" />
 
     <ConstantPermeability
       name="rockPerm"
-      permeabilityComponents="{ 1.0e-13, 1.0e-13, 1.0e-13 }"/>
+      permeabilityComponents="{ 1.0e-13, 1.0e-13, 1.0e-13 }" />
 
   </Constitutive>
 
@@ -72,7 +75,7 @@
       setNames="{ all }"
       objectPath="ElementRegions/Domain"
       fieldName="pressure"
-      scale="1.0e7"/>    
+      scale="1.0e7" />
   </FieldSpecifications>
-  
-</Problem>
+
+</Problem>