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fixed UDUNITS error #101

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Merged
gmao-rreichle merged 2 commits into from
Jun 6, 2025
Merged

fixed UDUNITS error #101

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45b8a9a
fix UDUNITS error
weiyuan-jiang Jun 2, 2025
508edb4
get nco command from baselib
weiyuan-jiang Jun 4, 2025
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -15,6 +15,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Fixed

- Fixed error from MAPL's ApplicationSupport.F90 to init UDUNITS

### Removed

### Deprecated
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14 changes: 7 additions & 7 deletions GEOSldas_App/lenkf_j_template.py
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Expand Up @@ -63,6 +63,8 @@

source $GEOSBIN/g5_modules

setenv BASEBIN ${{BASEDIR}}/Linux/bin

setenv MPI_STACK {DETECTED_MPI_STACK}

if ( ${{MPI_STACK}} == "openmpi" ) then
Expand Down Expand Up @@ -103,8 +105,6 @@
# reversed sequence for LADAS_COUPLING (Sep 2020) (needed when coupling with ADAS using different BASEDIR)
setenv LD_LIBRARY_PATH ${{BASEDIR}}/${{ARCH}}/lib:${{ESMADIR}}/lib:${{LD_LIBRARY_PATH}}

module load nco

setenv RUN_CMD "$GEOSBIN/esma_mpirun -np "

#######################################################################
Expand Down Expand Up @@ -602,9 +602,9 @@

sed -i -e "s/NT/$LEN_SUB/g" timestamp.cdl
sed -i -e "s/DATAVALUES/$tstep2/g" timestamp.cdl
ncgen -k4 -o timestamp.nc4 timestamp.cdl
ncrcat -h $EXPID.$ThisCol.${{YYYY}}${{MM}}${{DD}}_* ${{EXPID}}.${{ThisCol}}.$YYYY$MM$DD.nc4
ncks -4 -h -v time_stamp timestamp.nc4 -A ${{EXPID}}.${{ThisCol}}.$YYYY$MM$DD.nc4
$BASEBIN/ncgen -k4 -o timestamp.nc4 timestamp.cdl
$BASEBIN/ncrcat -h $EXPID.$ThisCol.${{YYYY}}${{MM}}${{DD}}_* ${{EXPID}}.${{ThisCol}}.$YYYY$MM$DD.nc4
$BASEBIN/ncks -4 -h -v time_stamp timestamp.nc4 -A ${{EXPID}}.${{ThisCol}}.$YYYY$MM$DD.nc4
/bin/rm timestamp.cdl
/bin/rm timestamp.nc4
# rudimentary check for desired nc4 file; if ok, delete sub-daily files
Expand Down Expand Up @@ -745,7 +745,7 @@
set tmp_file = $EXPDIR/output/$EXPDOMAIN/rs/$ENSDIR/Y${{eYEAR}}/M${{eMON}}/${{EXPID}}.${{rstf}}_internal_rst.${{eYEAR}}${{eMON}}${{eDAY}}_${{eHour}}${{eMin}}
# copy generic restart file to final location/name but remove lat/lon variables
# (lat/lon variables are not correct when running in EASE-grid tile space)
ncks -4 -O -C -x -v lat,lon ${{rstf}}${{ENSID}}_internal_checkpoint $tmp_file
$BASEBIN/ncks -4 -O -C -x -v lat,lon ${{rstf}}${{ENSID}}_internal_checkpoint $tmp_file
/bin/rm -f ${{rstf}}${{ENSID}}_internal_checkpoint
set old_rst = `/usr/bin/readlink -f $EXPDIR/input/restart/${{rstf}}${{ENSID}}_internal_rst`
/bin/rm -f $EXPDIR/input/restart/${{rstf}}${{ENSID}}_internal_rst
Expand Down Expand Up @@ -777,7 +777,7 @@
set TM = `echo $ThisTime | cut -c5-6`
set THISDIR = $EXPDIR/output/$EXPDOMAIN/rs/$ENSDIR/Y${{TY}}/M${{TM}}/
if (! -e $THISDIR ) mkdir -p $THISDIR
(ncks -4 -O -C -x -v lat,lon $rfile ${{THISDIR}}${{EXPID}}.landpert_internal_rst.${{ThisTime}}.nc4;\\
($BASEBIN/ncks -4 -O -C -x -v lat,lon $rfile ${{THISDIR}}${{EXPID}}.landpert_internal_rst.${{ThisTime}}.nc4;\\
/usr/bin/gzip ${{THISDIR}}${{EXPID}}.landpert_internal_rst.${{ThisTime}}.nc4; \\
/bin/rm -f $rfile) &
end
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