decima version=0.2.2, gene_expression prediction, sequence shifting and fine-tuning#19
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MuhammedHasan merged 10 commits intomainfrom Jul 21, 2025
Merged
decima version=0.2.2, gene_expression prediction, sequence shifting and fine-tuning#19MuhammedHasan merged 10 commits intomainfrom
MuhammedHasan merged 10 commits intomainfrom
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* enable finetune via cli * split input and output directories * add mygene * added ensembl * added N padding * add more params * added args to cli finetune * add csv logging * add csv logging * add run name to checkpoints * gene pearson metric * training 202506 * added new params * added topk * reset unnecessary changes * reset unnecessary changes * reset unnecessary changes * reset unnecessary changes * reset unnecessary changes * fixed savek typo * more useful print * finetuning updates --------- Co-authored-by: Muhammed Hasan Celik <celik.muhammed_hasan@gene.com>
avantikalal
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Jul 21, 2025
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